Janet K. Jansson
Earth & Biological Sciences
Pacific Northwest National Laboratory
PO Box 999
Richland, WA 99352
Janet Jansson is the Division Director of Biological Sciences at the Pacific Northwest National Laboratory (PNNL). She is also PNNL’s sector manager for the U.S. Department of Energy Office of Biological and Environmental Research’s Biological Systems Science Division. Before coming to PNNL (June 2014) she was a senior staff scientist at Lawrence Berkeley National Laboratory (2007-2014) and headed the Ecosystems Biology Program for the Earth Sciences Division at the Berkeley Lab. She also held Adjunct Professor positions at UC Berkeley and the University of Copenhagen, Denmark, from 2012-2014.
Dr. Jansson obtained her Ph.D. in 1988 at Michigan State University and then established a successful research career in Sweden over the next 20 years. From 2000-2006 she was Professor and Chair of Environmental Microbiology at the Swedish University of Agricultural Sciences and Vice Dean of the Natural Sciences Faculty, where she coordinated "The Uppsala Microbiomics Center," a Swedish strategic national center of excellence.
She has more than 30 years experience in microbial ecology. Her specific expertise is in the use of molecular approaches (omics) to study complex microbial communities, such as those residing in soil, sediments, and the human gut. Specific contributions include monitoring of bacteria and their physiological state in soil and in association with plants; in this capacity she conducted the first field trial of a genetically modified microbe in Sweden. Dr. Jansson also used multi-omics approaches to determine the impact of the Deepwater Horizon oil spill on water, beach, and sediment communities. She is currently studying the impact of climate change on microbial communities in prairie and arctic ecosystems; including a focus on the impact of warming on permafrost soil microbiomes. Dr. Jansson’s research also focuses on the human microbiome, starting with determining long-term impacts of antibiotics on the gut microbiome, as well as impact of inflammatory bowel disease and diet. She was the first to show that the gut microbiome could be transferred upon fecal transplantation. Currently, she is coordinating Microbiomes in Transition (MinT), a large research initiative at PNNL that takes a multidisciplinary approach to determine how microbiomes are impacted by perturbations, such as climate change for environmental microbiomes and environmental exposures for human microbiomes.
Dr. Jansson is a Fellow of the American Academy of Microbiology, has more than 100 publications and is the editor of two books on molecular microbial ecology and a textbook on soil microbiology. She currently serves as the President of the International Society for Microbiology (ISME) and as a senior editor of The ISME Journal.
- Environmental microbiology
- Molecular microbial ecology
- Human microbiome
Education and Credentials
- B.S. Biology & Soil Science (dual), New Mexico State University, 1980
- M.S. Soil Microbiology, Colorado State University, 1983
- Ph.D. Microbial Ecology, Michigan State University, 1988
- Postdoc. Biochemistry, Stockholm University, 1991
Affiliations and Professional Service
- President: International Society of Microbial Ecology (ISME) (2014-2016); Vice President/President elect (2012-2014)
- Conference chair: Gordon Research Conference on Applied and Environmental Microbiology (2013; Vice Chair 2011); Co-Chair: ASM Beneficial Host-Microbe conference, San Antonio, TX (2012); Session Chair: "Permafrost Microbiology," AGU conference, San Francisco (2012); Conference chair: 10th Symposium on Bacterial Genetics and Ecology (BAGECO-10), Uppsala, Sweden (2009).
- Co-Editor-in-Chief, The ISME Journal (2010-2012); Senior Reviews Editor (2013-present).
- Editor, Mbio (2014-present)
- Editorial Board member Environmental Microbiology, Current Opinion in Biotechnology, Applied and Environmental Microbiology, FEMS Microbiology Ecology, Microbiome
- Steering Committee Member: Earth Microbiome Project (www.earthmicrobiome.org); NSF RCN TerraGenome (www.terragenome.org)
- Advisory Board Member: SciLifeLab (Sweden) > 2014
- Invited expert to White House Roundtable on the Microbiome, Washington DC (2014)
- Coordinator of the Swedish Network of Excellence: Uppsala Microbiomics Center (2006-2007)
- Member of the Swedish Gene Technology Advisory Board (2000-2006)
- Member of the Swedish Royal Academy of Sciences, National Committee for Biology (2006-2007)
- Swedish representative for the International Union of Biological Sciences (2006-2007)
- Coordinator of EU project: MAREP, Marker/reporter genes in Microbial Ecology with 26 partners from 11 different countries (1997-1999)
Awards and Recognitions
- Fellow, American Academy of Microbiology (2013)
- Faculty 1000 (2013)
- Distinguished Francis C. Clark Lecture, Soil Science Society of America: recognizing achievements in soil biology (2013).
- Recent Distinguished Lectures/Keynote addresses: AAAS Cutting Edge: The Art and Science of Climate Change (May 1, 2014) Washington, DC; Novartis: Multi-omics of the gut microbiome (Oct. 29, 2014) Emeryville, CA; Argonne Soil Metagenomics Conference: Permafrost soil metagenomics (Oct. 2-3, 2014) Chicago, IL; ASM Beneficial Microbes Symposium: Multi-omics of the gut microbiome (Sept. 28-30, 2014) Boston, MA; Complex Soil Systems Conference: Untangling complexity of soil microbiomes (Sept. 4, 2014) Berkeley, CA; International Society of Microbial Ecology: Omics of the gut microbiome (Aug. 22-28, 2014) Seoul, S. Korea; Monsanto Fellows Symposium (Jan. 7-8, 2014) Saint Louis, MO; Keynote debate, Danish Society of Microbiology (Nov. 19, 2013), Copenhagen, Denmark; Frontiers in Biology Distinguished Lecture Series, Department of Biological Sciences, University of Alberta, (Sept. 12, 2013) Edmonton, Canada; Distinguished lecture, 8th CeBiTec Symposium, (Oct. 28-30, 2013) Bielefeld, Germany. Inspiring Wisdom Distinguished Lecture of State Key Laboratory of Microbial Metabolism (SKMML) (June 3, 2013) Shanghai Jiao Tong University, China; Distinguished Lecture. Microbial Sciences Initiative at Harvard, (April 14, 2012), Harvard, MA; UT/ORNL/KBRIN Bioinformatics Summit: (March 30-April 1, 2012), Louisville, KY; AAAS: Earth Microbiome Project (Feb. 16-20, 2012) Vancouver, BC.
- Bernstein HC, CJ Brislawn, RS Renslow, KL Dana, BR Morton, SR Lindemann, HS Song, E Atci, H Beyenal, JK Fredrickson, JK Jansson, and JJ Moran. 2017. "Trade-offs between microbiome diversity and productivity in a stratified microbial mat." The ISME Journal 11(2):405-414. doi:10.1038/ismej.2016.133
- Bernstein HC, RS McClure, V Thiel, NC Sadler, YM Kim, WB Chrisler, EA Hill, DA Bryant, MF Romine, JK Jansson, JK Fredrickson, and AS Beliaev. 2017. "Indirect interspecies regulation; transcriptional and physiological responses of a cyanobacterium to heterotrophic partnership." mSystems 2(2):Article No. e00181-16. doi:10.1128/mSystems.00181-16
- Snijders AM, SA Langley, YM Kim, CJ Brislawn, C Noecker, EM Zink, SJ Fansler, CP Casey, D Miller, Y Huang, GH Karpen , SE Celniker, JB Brown, EA Borenstein, JK Jansson, TO Metz, and JH Mao. 2017. "Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome." Nature Microbiology 2(2):Article No. 16221. doi:10.1038/nmicrobiol.2016.221
- Bergeron N, PT Williams, R Lamendella, N Faghihnia, A Grube, X Li, Z Wang, R Knight, JK Jansson, SL Hazen, and R Krauss. 2016. "Diets High in Resistant Starch Increase Plasma Levels of Trimethylamine-N-oxide, a Gut Microbiome Metabolite Associated with CVD Risk." British Journal of Nutrition 116(12):2020-2029. doi:10.1017/S0007114516004165
- Biteen JS, PC Blainey, ZG Cardon, M Chun, G Church, PC Dorrestein, SE Fraser, JA Gilbert, JK Jansson, R Knight, JF Miller, A Ozcan, KA Prather, SR Quake, EG Ruby, PA Silver, SA Taha, G van den Engh, PS Weiss, GCL Wong, AT Wright, and TD Young. 2016. "Tools for the Microbiome: Nano and Beyond." ACS Nano 10(1):6-37. doi:10.1021/acsnano.5b07826
- Gilbert JA, RA Quinn, JW Debelius , ZZ Xu, J Morton, N Garg, JK Jansson, PC Dorrestein, and R Knight. 2016. "Microbiome-wide association studies link dynamic microbial consortia to disease." Nature 535(7610):94-103. doi:10.1038/nature18850
- Gilbert JA, RA Quinn, JW Debelius , ZZ Xu, J Morton, N Garg, JK Jansson, PC Dorrestein, and R Knight. 2016. "Microbiome-Wide Association Studies Link Dynamic Microbial Consortia to Disease." Nature 535(7610):94-103. doi:10.1038/nature18850
- Guibert LM, CL Loviso, S Borglin, JK Jansson, HM Dionisi, and M Lozada . 2016. "Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments." Microbial Ecology 71(1):100-112. doi:10.1007/s00248-015-0698-0
- Jansson JK, and ES Baker. 2016. "A multi-omic future for microbiome studies." Nature Microbiology 1(5):Article No. 16049. doi:10.1038/NMICROBIOL.2016.49
- Mackelprang R, S Saleska, CS Jacobsen , JK Jansson, and N Tas. 2016. "PERMAFROST META-OMICS AND CLIMATE CHANGE." Annual Review of Earth and Planetary Sciences 44:439-62. doi:10.1146/annurev-earth-060614-105126
- Matos MN, M Lozada , LE Anselmino, MíA Musumeci, B Henrissat, JK Jansson, WP Mac Cormack, J Carroll, S Sjoling, L Lundgren, and HM Dionisi. 2016. "Metagenomics Unveils the Attributes of the Alginolytic Guilds of Sediments from Four Distant Cold Coastal Environments." Environmental Microbiology 18(12):4471-4484. doi:10.1111/1462-2920.13433
- Nakamura YK, C Metea, L Karstens, M Asquith, H Gruner, C Moscibrocki, I Lee , CJ Brislawn, JK Jansson, JT Rosenbaum, and P Lin. 2016. "Gut Microbial Alterations Associated with Protection from Autoimmune Uveitis." Investigative Ophthalmology & Visual Science 57(8):3747-3758. doi:10.1167/iovs.16-19733
- Nesme J, W Achouak, SN Agathos, M Bailey, P Baldrian, D Brunel, A Frostegard, T Heulin, JK Jansson, E Jurkevitch, K Kruus, GA Kowalchuk, ANTONIO LAGARES, HILARYM LAPPIN-SCOTT, PHILLIP LEMANCEAU, D LE PASLIER, I Mandic-Mulec, JC Murrell, DD Myrold, R Nalin, P Nannipieri , JD Neufeld, F O'Gara, JJ Parnell, A Puhler, V Pylro, J Ramos, JR, LF Roesch, M Schloter, C Schleper , A Sczyrba, A Sessitsch, S Sjoling, J Sorensen , SJ Sorensen, CC Tebbe, E Topp, G Tsiamis, JD van Elsas, G van Keulen, F Widmer, M Wagner, T Zhang, X Zhang, L Zhao, YG Zhu, TM Vogel, and P Simonet. 2016. "Back to the Future of Soil Metagenomics." Frontiers in Microbiology 7:Article No. 73. doi:10.3389/fmicb.2016.00073
- Noecker C, A Eng, S Srinivasan, CM Theriot , VIB Young, JK Jansson, DN Fredricks, and EA Borenstein. 2016. "Metabolic model-based integration of microbiome taxonomic and metabolomic profiles elucidates mechanistic links between ecological and metabolic variation." mSystems 1(1):, doi:10.1128/mSystems.00013-15
- White RA, III, EM Bottos, T Roy Chowdhury, JD Zucker, CJ Brislawn, CD Nicora, SJ Fansler, KR Glaesemann, KA Glass, and JK Jansson. 2016. "Moleculo long-read sequencing facilitates assembly and resolves functionally active genomic bins from complex soil metagenomes." mSystems 1(3):, doi:10.1128/mSystems.00045-16
- White RA, III, SJ Callister, RJ Moore, EM Baker, and JK Jansson. 2016. "The present and future of microbiome analyses." Nature Protocols 11(11):2049-2053. doi:10.1038/nprot.2016.148
- Alivisatos AP, MJ Blaser, EL Brodie, M Chun, JL Dangl, TJ Donohue, PC Dorrestein, JA Gilbert, JL Green, JK Jansson, R Knight, ME Maxon, MJ McFall-Ngai , J Miller, KS Pollard, EG Ruby, and SA Taha. 2015. "A unified initiative to harness Earth’s microbiomes." Science 350(6260):507-508. doi:10.1126/science.aac8480
- Carillo-Araujo M, N Tas, RJ Alcntara-Hernndez, O Gaona, JE Schondube, RA Medellin, JK Jansson, and LI Falcon . 2015. "Phyllostomid bat microbiome composition is associated to host phylogeny and feeding strategies." Frontiers in Microbiology 6:Article No. 447. doi:10.3389/fmicb.2015.00447
- Dicksved J J, JK Jansson, and JE Lindberg . 2015. "Fecal microbiome of growing pigs fed a cereal based diet including chicory (Cichorium intybus L.) or ribwort (Plantago lanceolata L.) forage." Journal of Animal Science and Biotechnology 6:Article No. 53. doi:10.1186/s40104-015-0054-8
- Hultman J, MP Waldrop, R Mackelprang, M David, J McFarland, SJ Blazewicz, JW Harden, M Turetsky, AD McGuire, MB Shah, NC VerBerkmoes, LH Lee, K Mavrommatis, and JK Jansson. 2015. "Multi-omics of Permafrost, Active Layer and Thermokarst Bog Soil Microbiomes." Nature 521(7551):208-212. doi:10.1038/nature14238
- Keravec M, J Mounier, E Prestat , S Vallet, JK Jansson, G Bergaud , S Rosec, S Gourious, G Rault, E Coton, G Barbier, and G Hery-Arnaud. 2015. "Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization." SpringerPlus 4:Article No. 405. doi:10.1186/s40064-015-1207-0
- Koeberl M, RA White, III, S Erschen, N Spanberger, TF El-Arabi, JK Jansson, and G Berg. 2015. "Complete genome sequence of Bacillus amyloliquefaciens strain Co1-6, a plant growth-promoting rhizobacterium of Calendula officinalis." Genome Announcements 3(4):Article No. e00862-15. doi:10.1128/genomeA.00862-15
- Koeberl M, RA White, III, S Erschen, TF El-Arabi, JK Jansson, and G Berg. 2015. "Draft genome sequence of Paenbacillus polymyxa strain Mc5Re-14, an antagonistic root endophyte of Matricaria chamomilla." Genome Announcements 3(4):Article No. e00861-15. doi:10.1128/genomeA.00861-15
- Koeberl M, RA White, III, S Erschen, TF El-Arabi, JK Jansson, and G Berg. 2015. "Draft genome sequence of Streptomyces sp. strain Wb2n-11, a desert isolate with broad-spectrum antagonism against soilborne phytopathogens ." Genome Announcements 3(4):e00860-15. doi:10.1128/genomeA.00860-15
- Lipson DA, TK Raab, M Parker , ST Kelley , CJ Brislawn, and JK Jansson. 2015. "Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils." Environmental Microbiology Reports 7(4):649-657. doi:10.1111/1758-2229.12301
- Lipson DA, TK Raab, M Parker , ST Kelley , CJ Brislawn, and JK Jansson. 2015. "Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils." Environmental Microbiology Reports 7(4):649-657. doi:10.1111/1758-2229.12301
- Mao JH, SA Langley , Y Huang, M Hang, KE Bouchard, SE Celniker, JB Brown , JK Jansson, GH Karpen , and AM Snijders. 2015. "Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice." Scientific Reports 5:16247. doi:10.1038/srep16247
- Schostag M, M Stibal, CS Jacobsen , J Baelum, N Tas, B Elberling, JK Jansson, P Semenchuk, and A Prieme. 2015. "Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses." Frontiers in Microbiology 6:Article No. 399. doi:10.3389/fmicb.2015.00399
- Walters W, ER Hyde, D Berg-Lyons, G Ackermann, G Humphrey, A Parada , JA Gilbert, JK Jansson, G Caporaso, JA Fuhrman, A Apprill, and R Knight. 2015. "Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys." mSystems 1(1):Article No. e00009-15. doi:10.1128/mSystems.00009-15
Schostag M, M Stibal, CS Jacobsen, J Baelum, N Tas, B Elberling, JK Jansson, P Semenchuk, and A Prieme. 2015. "Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses." Frontiers in Microbiology 6.
David MM, S Cecillon, BM Warne, E Prestat, JK Jansson, and TM Vogel. 2014. "Microbial ecology of chlorinated solvent biodegradation." Environmental Microbiology. DOI: 10.1111/1462-2920.12413
Gilbert JA, JK Jansson, and R Knight. 2014. "The Earth microbiome project: Successes and aspirations." BMC Biology 12.
Howe AC, JK Jansson, SA Malfatti, SG Tringe, JM Tiedje, and CT Brown. 2014. "Tackling soil diversity with the assembly of large, complex metagenomes." Proceedings of the National Academy of Sciences of the United States of America 111(13):4904-4909.
Jansson JK and N Tas. 2014. "The microbial ecology of permafrost." Nature Reviews Microbiology 12(6):414-425.
Kyrpides NC et al. 2014. "Genomic encyclopedia of bacteria and archaea: Sequencing a myriad of type strains." PLoS Biology 12(8).
Lamendella R, S Strutt, S Borglin, R Chakraborty, N Tas, OU Mason, J Hultman, E Prestat, TC Hazen, and JK Jansson. 2014. "Assessments of the Deepwater Horizon oil spill impact on Gulf coast microbial communities." Frontiers in Microbiology 5. DOI: 10.3389/fmicb.2014.00130
Mason OU, J Han, T Woyke, and JK Jansson. 2014. "Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill." Frontiers in Microbiology 5.
Mason OU, NM Scott, A Gonzalez, A Robbins-Pianka, J Baelum, J Kimbrel, NJ Bouskill, E Prestat, S Borglin, DC Joyner, JL Fortney, D Jurelevicius, WT Stringfellow, L Alvarez-Cohen, TC Hazen, R Knight, JA Gilbert and JK Jansson. 2014. "Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill." ISME Journal 8(7): 1464-1475.
Myrold DD, LH Zeglin, and JK Jansson. 2014. "The potential of metagenomic approaches for understanding soil microbial processes." Soil Science Society of America Journal 78(1):3-10.
Prestat E, MM David, J Hultman, N Tas, R Lamendella, J Dvornik, R Mackelprang, DD Myrold, A Jumpponen, SG Tringe, E Holman, K Mavromatis, and JK Jansson. 2014. "FOAM (Functional Ontology Assignments for Metagenomes):A Hidden Markov Model (HMM) database with environmental focus." Nucleic Acids Research 42(19).
Scott NM, M Hess, NJ Bouskill, OU Mason, JK Jansson, and JA Gilbert. 2014. "The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments." Frontiers in Microbiology 5.
Tas N, E Prestat, JW McFarland, KP Wickland, R Knight, AA Berhe, T Jorgenson, MP Waldrop, and JK Jansson. 2014. "Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest." ISME Journal 8(9):1904-1919.
Woo HL, NR Ballor, TC Hazen, JL Fortney, B Simmons, KW Davenport, L Goodwin, N Ivanova, NC Kyrpides, K Mavromatis, T Woyke, J Jansson, J Kimbrel, and KM DeAngelis. 2014. "Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2." Standards in Genomic Sciences 9:19.
Curtis T, J-M Daran, JT Pronk, J Frey, JK Jansson, A Robbins-Pianka, R Knight, A Schnurer, BF Smets, EJ Smid, T Abee, M Vicente, and K Zengler. 2013. "Crystal ball-2013." Microbial Biotechnology 6(1):3-16.
- Jansson JK. 2013. "FORUM:Microbiology the life beneath our feet." Nature 494(7435):40-41.
- Lozupone CA, J Stombaugh, A Gonzalez, G Ackermann, D Wendel, Y Vazquez-Baeza, JK Jansson, JI Gordon, and R Knight. 2013. "Meta-analyses of studies of the human microbiota." Genome Research 23(10):1704-1714.
- Nicora CD, BJ Anderson, SJ Callister, AD Norbeck, SO Purvine, JK Jansson, OU Mason, MM David, D Jurelevicius, RD Smith, and MS Lipton. 2013. "Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies." Proteomics 13(18-19):2776-2785.
Graham DE, MD Wallenstein, TA Vishnivetskaya, MP Waldrop, TJ Phelps, SM Pfiffner, TC Onstott, LG Whyte, EM Rivkina, DA Gilichinsky, DA Elias, R Mackelprang, NC VerBerkmoes, RL Hettich, D Wagner, SD Wullschleger and JK Jansson. 2012. "Microbes in thawing permafrost: The unknown variable in the climate change equation." ISME Journal 6(4): 709-712.
Huttenhower C et al. 2012. "Structure, function and diversity of the healthy human microbiome." Nature 486(7402):207-214.
Jansson JK, JD Neufeld, MA Moran, and JA Gilbert. 2012. "Omics for understanding microbial functional dynamics." Environmental Microbiology 14(1):1-3.
Knight R, J Jansson, D Field, N Fierer, N Desai, JA Fuhrman, P Hugenholtz, D van der Lelie, F Meyer, R Stevens, MJ Bailey, JI Gordon, GA Kowalchuk, and JA Gilbert. 2012. "Unlocking the potential of metagenomics through replicated experimental design." Nature Biotechnology 30(6):513-520.
Lamendella R, N VerBerkmoes, and JK Jansson. 2012. "'Omics' of the mammalian gut - new insights into function." Current Opinion in Biotechnology 23(3):491-500.
Lozupone CA, JI Stombaugh, JI Gordon, JK Jansson, and R Knight. 2012. "Diversity, stability and resilience of the human gut microbiota." Nature 489(7415):220-230.
Mason OU, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, J Han, H-YN Holman, J Hultman, R Lamendella, R Mackelprang, S Malfatti, LM Tom, SG Tringe, T Woyke, J Zhou, EM Rubin, and JK Jansson. 2012. "Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill." ISME Journal 6(9):1715-1727.
Methe BA et al. 2012. "A framework for human microbiome research." Nature 486(7402):215-221.
- Baelum J, S Borglin, R Chakraborty, JL Fortney, R Lamendella, OU Mason, M Auer, M Zemla, M Bill, ME Conrad, SA Malfatti, SG Tringe, H-Y Holman, TC Hazen and JK Jansson. 2012. "Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill." Environmental Microbiology 14(9):2405-2416.
- Erickson AR, BL Cantarel, R Lamendella, Y Darzi, EF Mongodin, C Pan, M Shah, J Halfvarson, C Tysk, B Henrissat, J Raes, NC Verberkmoes, CM Fraser, RL Hettich, and JK Jansson. 2012. "Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease." PLoS One 7(11).
- Lu Z, Y Deng, JD Van Nostrand, Z He, J Voordeckers, A Zhou, Y-J Lee, OU Mason, EA Dubinsky, KL Chavarria, LM Tom, JL Fortney, R Lamendella, JK Jansson, P D'Haeseleer, TC Hazen, and J Zhou. 2012. "Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume." ISME Journal 6(2):451-460.
Jansson JK. 2011. "Towards "tera-terra":Terabase sequencing of terrestrial metagenomes." Microbe 6(7):309-315.
Mackelprang R, MP Waldrop, KM DeAngelis, MM David, KL Chavarria, SJ Blazewicz, EM Rubin, and JK Jansson. 2011. "Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw." Nature 480(7377):368-371.
Yilmaz P et al. 2011. "Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications." Nature Biotechnology 29(5):415-420.
- Cantarel BL, AR Erickson, NC VerBerkmoes, BK Erickson, PA Carey, C Pan, M Shah, EF Mongodin, JK Jansson, CM Fraser-Liggett, and RL Hettich. 2011. "Strategies for metagenomic-guided whole-community proteomics of complex microbial environments." PLoS One 6(11).
Chourey K, J Jansson, N VerBerkmoes, M Shah, KL Chavarria, LM Tom, EL Brodie, and RL Hettich. 2010. "Direct cellular lysis/protein extraction protocol for soil metaproteomics." Journal of Proteome Research 9(12):6615-6622.
Gilbert JA, F Meyer, J Jansson, J Gordon, N Pace, J Tiedje, R Ley, N Fierer, D Field, N Kyrpides, FO Glockner, HP Klenk, KE Wommack, E Glass, K Docherty, R Gallery, R Stevens, and R Knight. 2010. "The Earth Microbiome Project: Meeting report of the "1st EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6(th) 2010." Standards in Genomic Sciences 3(3):249-253.
Hazen TC, EA Dubinsky, TZ DeSantis, GL Andersen, YM Piceno, N Singh, JK Jansson, A Probst, SE Borglin, JL Fortney, WT Stringfellow, M Bill, ME Conrad, LM Tom, KL Chavarria, TR Alusi, R Lamendella, DC Joyner, C Spier, J Baelum, M Auer, ML Zemla, R Chakraborty, EL Sonnenthal, P D'Haeseleer, H-YN Holman, S Osman, Z Lu, JD Van Nostrand, Y Deng, J Zhou, and OU Mason. 2010. "Deep-sea oil plume enriches indigenous oil-degrading bacteria." Science 330(6001):204-208.
Hettich RL, AL Russell, NC VerBerkmoes, M Shah, C Fraser-Liggett, and JK Jansson. 2010. "Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities." BMC Bioinformatics 11.
Hjort K, M Bergstrom, MF Adesina, JK Jansson, K Smalla, and S Sjoling. 2010. "Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil." FEMS Microbiology Ecology 71(2):197-207.
Jakobsson HE, C Jernberg, AF Andersson, M Sjolund-Karlsson, JK Jansson, and L Engstrand. 2010. "Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome." PLoS One 5(3).
Jansson JK and JK Fredrickson. 2010. "Stewards of a changing planet:commentaries from ISME13 Plenary Lecturers." ISME Journal 4(9):1079-1080.
Prosser JI, JK Jansson, and W-T Liu. 2010. "Nucleic-acid-based characterization of community structure and function." In Environmental Molecular Microbiology, pp 63-86, W.-T. Liu and J. K. Jansson, eds. Norfolk, UK, Caister Academic Press.
Wessen E, K Nyberg, JK Jansson, and S Hallin. 2010. "Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management." Applied Soil Ecology 45(3):193-200.
- Jernberg C, S Lofmark, C Edlund, and JK Jansson. 2010. "Long-term impacts of antibiotic exposure on the human intestinal microbiota." Microbiology-SGM 156:3216-3223.
- Khoruts A, J Dicksved, JK Jansson, and MJ Sadowsky. 2010. "Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent clostridium difficile-associated diarrhea." Journal of Clinical Gastroenterology 44(5):354-360.
- Willing BP, J Dicksved, J Halfvarson, AF Andersson, M Lucio, Z Zheng, G Jarnerot, C Tysk, JK Jansson, and L Engstrand. 2010. "A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes." Gastroenterology 139(6):1844-1854.
Unell M, PE Abraham, M Shah, B Zhang, C Rueckert, NC VerBerkmoes, and JK Jansson. 2009. "Impact of phenolic substrate and growth temperature on the Arthrobacter chlorophenolicus proteome." Journal of Proteome Research 8(4):1953-1964.
Verberkmoes NC, AL Russell, M Shah, A Godzik, M Rosenquist, J Halfvarson, MG Lefsrud, J Apajalahti, C Tysk, RL Hettich, and JK Jansson. 2009. "Shotgun metaproteomics of the human distal gut microbiota." ISME Journal 3(2):179-189.
Wu Z, B Willing, J Bjerketorp, JK Jansson, and K Hjort. 2009. "Soft inertial microfluidics for high throughput separation of bacteria from human blood cells." Lab on a Chip 9(9):1193-1199.
- Dicksved J, M Lindberg, M Rosenquist, H Enroth, JK Jansson, and L Engstrand. 2009. "Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls." Journal of Medical Microbiology 58(4):509-516.
- Jansson J, B Willing, M Lucio, A Fekete, J Dicksved, J Halfvarson, C Tysk, and P Schmitt-Kopplin. 2009. "Metabolomics reveals metabolic biomarkers of Crohn's disease." PLoS One 4(7).
- Vogel TM, P Simonet, JK Jansson, PR Hirsch, JM Tiedje, JD van Elsas, MJ Bailey, R Nalin, and L Philippot. 2009. "TerraGenome:A consortium for the sequencing of a soil metagenome." Nature Reviews Microbiology 7(4):252-252.
- Vogel TM, PR Hirsch, P Simonet, JK Jansson, JM Tiedje, JD van Elsas, R Nalin, L Philippot, and MJ Bailey. 2009. "Advantages of the metagenomic approach for soil exploration: Reply from Vogel et al." Nature Reviews Microbiology 7(10)756-757.
- Willing B, J Halfvarson, J Dicksved, M Rosenquist, G Jarnerot, L Engstrand, C Tysk, and JK Jansson. 2009. "Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease." Inflammatory Bowel Diseases 15(5):653-660.
Bjerketorp J, ANT Cbiang, K Hjort, M Rosenquist, W-T Liu and JK Jansson. 2008. "Rapid lab-on-a-chip profiling of human gut bacteria." Journal of Microbiological Methods 72(1):82-90.
Dicksved J, J Halfvarson, M Rosenquist, G Jarnerot, C Tysk, J Apajalahti, L Engstrand, and JK Jansson. 2008. "Molecular analysis of the gut microbiota of identical twins with Crohn's disease." ISME Journal 2(7):716-727.
Edlund A and JK Jansson. 2008. "Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments." FEMS Microbiology Ecology 65(3):513-525.
Edlund A, F Hardeman, JK Jansson, and S Sjoling. 2008. "Active bacterial community structure along vertical redox gradients in Baltic Sea sediment." Environmental Microbiology 10(8):2051-2063.
Jaderlund L, M Hellman, I Sundh, MJ Bailey, and JK Jansson. 2008. "Use of a novel nonantibiotic triple marker gene cassette to monitor high survival of Pseudomonas fluorescens SBW25 on winter wheat in the field." FEMS Microbiology Ecology 63(2):156-168.
Jaederlund L, V Arthurson, U Granhall, and JK Jansson. 2008. "Specific interactions between arbuscular mycorrhizal fungi and plant growth-promoting bacteria: As revealed by different combinations." FEMS Microbiology Letters 287(2):174-180.
- Unell M, K Nordin, C Jernberg, J Stenstrom, and JK Jansson. 2008. "Degradation of mixtures of phenolic compounds by Arthrobacter chlorophenolicus A6." Biodegradation 19(4):495-505.
- van Elsas JD, R Costal, J Jansson, S Sjoling, M Bailey, R Nalin, TM Vogel, and L van Overbeek. 2008. "The metagenomics of disease-suppressive soils - experiences from the METACONTROL project." Trends in Biotechnology 26(11):591-601.
Dicksved J, H Floistrup, A Bergstrom, M Rosenquist, G Pershagen, A Scheynius, S Roos, JS Alm, L Engstrand, C Braun-Fahrlander, E von Mutius, and JK Jansson. 2007. "Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles." Applied and Environmental Microbiology 73(7):2284-2289.
Hjort K, A Lembke, A Speksnijder, K Smalla, and JK Jansson. 2007. "Community structure of actively growing bacterial populations in plant pathogen suppressive soil." Microbial Ecology 53(3):399-413.
Steger K, AM Sjoegren, A Jarvis, JK Jansson, and I Sundh. 2007. "Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste." Journal of Applied Microbiology 103(2):487-498.
van Elsas JD, JK Jansson, and JT Trevors. 2007. Modern Soil Microbiology. CRC Press, Boca Raton, Florida.
- Jernberg C, S Lofmark, C Edlund, and JK Jansson. 2007. "Long-term ecological impacts of antibiotic administration on the human intestinal microbiota." ISME Journal 1(1):56-66.
- Unell M, N Kabelitz, JK Jansson, and HJ Heipieper. 2007. "Adaptation of the psychrotroph Arthrobacter chlorophenolicus A6 to growth temperature and the presence of phenols by changes in the anteiso/iso ratio of branched fatty acids." FEMS Microbiology Letters 266(2):138-143.
Edlund A and JK Jansson. 2006. "Changes in active bacterial communities before and after dredging of highly polluted Baltic Sea sediments." Applied and Environmental Microbiology 72(10):6800-6807.
Edlund A, T Soule, S Sjoling, and JK Jansson. 2006. "Microbial community structure in polluted Baltic Sea sediments." Environmental Microbiology 8(2):223-232.
Toljander JF, V Artursson, LR Paul, JK Jansson, and RD Finlay. 2006. "Attachment of different soil bacteria to arbuscular mycorrhizal fungal extraradical hyphae is determined by hyphal vitality and fungal species." FEMS Microbiology Letters 254(1):34-40.
van Elsas JD, V Torsvik, A Hartmann, L ØvreaÌŠs, and JK Jansson. 2006. "The bacteria and archaea in soil." In Modern Soil Microbiology, Second Edition, pp 83-106. JD van Elsas, JK Jansson, and JT Trevors, eds. Hoboken, CRC Press, Boca Raton, Florida.
- Artursson V, RD Finlay and JK Jansson. 2006. "Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth." Environmental Microbiology 8(1):1-10.
- Bjerketorp J, S Hakansson, S Belkin, and JK Jansson. 2006. "Advances in preservation methods:Keeping biosensor microorganisms alive and active." Current Opinion in Biotechnology 17(1):43-49.
- Lofmark S, C Jernberg, JK Jansson, and C Edlund. 2006. "Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes." Journal of Antimicrobial Chemotherapy 58(6):1160-1167.