Staff information

PNNL Publications

2024

• George A.D., W.E. Anthony, A.D. McNaughton, T.T. Lin, V. Torres-Rodriguez, S.M. Mahserejian, and S.L. Altus, et al. 2024. Multi-scale Simulation, Calibration, and Optimization of Calcium Carbonate Precipitation in Microbial Communities. PNNL-36693. Richland, WA: Pacific Northwest National Laboratory. Multi-scale Simulation, Calibration, and Optimization of Calcium Carbonate Precipitation in Microbial Communities
• Walukiewicz H.E., Y. Farris, M.C. Burnet, S.C. Feid, Y. You, H. Kim, and T. Bank, et al. 2024. "Regulation of bacterial stringent response by an evolutionary conserved ribosomal protein L11 methylation." mBio 15, no. 10:Art. No. e01773-24. PNNL-SA-186921. doi:10.1128/mbio.01773-24

2023

• Couvillion S.P., R.E. Danczak, D.T. Naylor, M.L. Smith, K.G. Stratton, V.L. Paurus, and K.J. Bloodsworth, et al. 2023. "Rapid remodeling of the soil lipidome in response to a drying-rewetting event." Microbiome 11, no. 2023:34. PNNL-SA-172149. doi:10.1186/s40168-022-01427-4

2022

• McClure R.S., Y. Farris, R.E. Danczak, W.C. Nelson, H. Song, A. Kessler, and J. Lee, et al. 2022. "Interaction Networks are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes." mSystems 7, no. 5:Art. No. e00372-22. PNNL-SA-169189. doi:10.1128/msystems.00372-22

2021

• Wu R., M.R. Davison, W.C. Nelson, E.B. Graham, S.J. Fansler, Y. Farris, and S.L. Bell, et al. 2021. "DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes." mBio 12, no. 6:e02595-21. PNNL-SA-166275. doi:10.1128/mBio.02595-21

2020

• Bhattacharjee A., A.M. Thompson, K.C. Schwarz, M.C. Burnet, Y. Kim, J. Nunez, and S.J. Fansler, et al. 2020. "Soil microbial EPS resiliency is influenced by carbon source accessibility." Soil Biology and Biochemistry 151. PNNL-SA-153321. doi:10.1016/j.soilbio.2020.108037
• Khan N., E. Yeung, Y. Farris, S.J. Fansler, and H. Bernstein. 2020. "A broad-host-range event detector: expanding and quantifying between Escherichia coli and Pseudomonas species." Synthetic Biology 5, no. 1:Article No: ysaa002. PNNL-SA-148063. doi:10.1093/synbio/ysaa002
• Lin V.S., N.C. Sadler, and Y. Farris. 2020. Probing Cooperation and Competition between Paenibacillus polymyxa and Setaria viridis under Nutrient Stress. PNNL-30598. Richland, WA: Pacific Northwest National Laboratory. Probing Cooperation and Competition between Paenibacillus polymyxa and Setaria viridis under Nutrient Stress
• McClure R.S., D.T. Naylor, Y. Farris, M.R. Davison, S.J. Fansler, K.S. Hofmockel, and J.K. Jansson. 2020. "Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome." Frontiers in Microbiology 11. PNNL-SA-153634. doi:10.3389/fmicb.2020.01987
• Nelson W.C., L.N. Anderson, R. Wu, J.E. McDermott, S.L. Bell, A. Jumpponen, and S.J. Fansler, et al. 2020. "Terabase Metagenome Sequencing of Grassland Soil Microbiomes." Microbiology Resource Announcements 9, no. 32:Article No. e00718-20. PNNL-SA-153752. doi:10.1128/MRA.00718-20
• Ogden A.J., T.W. Wietsma, T.E. Winkler, Y. Farris, G.L. Myers, and A. Ahkami. 2020. "Dynamics of Global Gene Expression and Regulatory Elements in Growing Brachypodium Root System." Scientific Reports 10. PNNL-SA-145907. doi:10.1038/s41598-020-63224-z

2019

• Boiteau R.M., S.J. Fansler, Y. Farris, J.B. Shaw, D.W. Koppenaal, L. Pasa Tolic, and J.K. Jansson. 2019. "Siderophore Profiling of Co-Habitating Soil Bacteria by Ultra-High Resolution Mass Spectrometry." Metallomics 11, no. 1:166-175. PNNL-SA-139283. doi:10.1039/c8mt00252e
• Lin V.S., N.C. Sadler, Y. Farris, E.H. Denis, L.C. Webber, and R.M. Francis. 2019. Identification of plant host and microbe model system for study of rhizophagy cycle. PNNL-29249. Richland, WA: Pacific Northwest National Laboratory. Identification of plant host and microbe model system for study of rhizophagy cycle
• Zegeye E. 2019. "Selection, Succession, and Stabilization of Soil Microbial Consortia." mSystems 4, no. 4:Article Number e00055-19. PNNL-SA-146173. doi:10.1128/mSystems.00055-19
• Zegeye E., C.J. Brislawn, Y. Farris, S.J. Fansler, K.S. Hofmockel, J.K. Jansson, and A.T. Wright, et al. 2019. "Selection, succession and stabilization of soil microbial consortia." mSystems 4, no. 4:e00055-19. PNNL-SA-138630. doi:10.1128/mSystems.00055-19
• Zegeye E., C.J. Brislawn, Y. Farris, S.J. Fansler, K.S. Hofmockel, J.K. Jansson, and A.T. Wright, et al. 2019. "Selection, Succession, and Stabilization of Soil Microbial Consortia." mSystems 4, no. 4:Article Number e00055-19. PNNL-SA-146173. doi:10.1128/mSystems.00055-19