September 3, 2025
Journal Article

Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design

Abstract

The Pore2Chip Python package is designed to create 2D micromodels using extracted data from 3D X-ray computed tomography (XCT) images. This package helps analyze soil structure and function, allowing for the investigation of hydro-biogeochemical processes that impact mineral extraction and reactivity, oxygen concentrations, and nutrient availability in disturbed or managed soils. Key metrics encompass pore size distributions, pore throat size distributions, and connectivity (pore coordination numbers). The final output is a 2D scalable SVG design representing a core or aggregate. Designs can be fabricated with methods such as laser etching, 3D printing, and photolithography.

Published: September 3, 2025

Citation

Truong A.X., M.K. Mudunuru, E. Rooney, A. Bhattacharjee, T. Varga, M. Mamud, and X. He, et al. 2025. Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design. Journal of Open Source Software 10, no. 112:8052. PNNL-SA-206144. doi:10.21105/joss.08052

Research topics