Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets

February 20, 2026

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Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets

Abstract

We developed an analysis pipeline for transposase-accessible chromatin sequencing (ATAC-Seq) data derived from bulk samples, which brings together publicly available R packages in addition to command-line tools designed for analysis of bulk ATAC-Seq data and can be run on any computer running a Linux-like operating system such as Ubuntu or Apple OSX.

Published: February 20, 2026

Citation

Leiser O.P., E.E. Carlson, J.E. Flores, A. Lin, T.Y. Chiang, and A.C. Sims. 2026. Establishing Data Analysis Pipeline for Bulk ATAC-Seq Datasets Richland, WA: Pacific Northwest National Laboratory.