Coastal wetlands are a critical component of the earth system that strongly influence the global water and biogeochemical cycles. They are also likely important sentinel of climate change. Because eco-geomorphological processes have long been recognized to be important for coastal wetland survival under accelerated sea-level rise (SLR), many eco-geomorphology models have been developed to assess the impact of climate change on coastal wetlands. Although these models differ substantially in complexity and numerical methods, few studies have investigated the algorithm-level uncertainties in these models. In this study, we developed a multiple-algorithm model framework of coastal wetlands that represents coastal hydrodynamics (such as water level, significant wave height and bottom shear stress) and four eco-geomorphological processes: mineral accretion, organic matter accretion, storm surge erosion and landward migration. We validated the model at three representative coastal wetland sites (Venice Lagoon, Plum Island Estuary and Hunter Estuary) for hydrodynamics, mineral accretion and organic matter accretion. Through model-data comparison, we showed that the model can well capture the dynamics of hydrodynamical and eco-geomorphological conditions in the study sites. Importantly, analysis of the multiple-algorithm simulations suggests that differences in the process representation of mineral and organic matter accretion may contribute to the recent contradicting predictions of coastal wetland evolution under accelerated SLR.