September 23, 2022
Journal Article

Soil metabolomics predict microbial taxa as biomarkers of moisture status in soils from a tidal wetland

Abstract

We present observations from a laboratory-controlled study on the impacts of ex-treme wetting and drying on a wetland soil microbiome. Our approach was to ex-perimentally challenge the soil microbiome to understand impacts on anaerobic carbon cycling processes as the system transitions from dryness to saturation and vice-versa. Specifically, we tested for impacts on stress responses related to shifts from wet to drought conditions. We used a combination of high- resolution data for small organic chemical (metabolites) and biological (community structure based on 16S rRNA sequencing) features. Using a robust correlation-independent data ap-proach, we further tested the predictive power of metabolites for the presence or absence of phyla. Here, we demonstrate that taking an untargeted, multidimen-sional data approach to the interpretation of metabolomics has the potential to in-dicate the causative pathways selecting for the observed bacterial community structure in soils.

Published: September 23, 2022

Citation

Roychowdhury T., L.M. Bramer, J.M. Brown, Y. Kim, E.M. Zink, T.O. Metz, and L. McCue, et al. 2022. Soil metabolomics predict microbial taxa as biomarkers of moisture status in soils from a tidal wetland. Microorganisms 10, no. 8:Art. No. 1653. PNNL-SA-172681. doi:10.3390/microorganisms10081653

Research topics