Disciplines and Skills

  • Biology
  • Proteomics research
  • Omics sample preparation
  • Biomolecular separations
  • High-performance liquid chromatography
  • Protein purification
  • Protein precipitation
  • Peptides
  • Protein assays
  • Protein and peptide chromatography (SEC, SCX, RPLC, ERLIC and SPE)
  • Immunoaffinity chromatography (Seppro IgY14, IgY7, SuperMix; Agilent MARS)
  • Isobaric stable isotope labeling (iTRAQ, TMT)
  • Immobilized metal affinity chromatography (IMAC)
  • Gel-electrophoresis
  • Laboratory automation
  • Sample preparation workflow management and coordination
  • Sample management
  • SOP and technical reports
  • Biohazard
  • Biosafety


  • Doctorate courses in Plant Physiology, Russian Academy of Agricultural Sciences
  • MS in Biology, Botany/Plant Biology, Saint Petersburg State University
  • BS in Biology, Botany/Plant Biology, Saint Petersburg State University

Affiliations and Professional Service

  • American Association for the Advancement of Science

Awards and Recognitions

  • International Plant Genetic Resources Institute, Vavilov-Frankel Fellowship (1997)


  • Jacobs, Jon M; Burnum-Johnson, Kristin E; Baker, Erin; Smith, Richard D; Gritsenko, Marina A; Orton, Daniel J. Application Filed Mar 13 2014. “BIOMARKERS FOR LIVER FIBROSIS.” U.S. Patent ApplicationNo. 14/209,860



  • Dou Y., E. Kawaler, D.C. Zhou, M.A. Gritsenko, C. Huang, L. Blumenberg, and A. Karpova, et al. 2020. "Proteogenomic Characterization of Endometrial Carcinoma." Cell 180, no. 4:729-748.e26. PNNL-SA-147326. doi:10.1016/j.cell.2020.01.026
  • McDermott J.E., O.A. Arshad, V.A. Petyuk, Y. Fu, M.A. Gritsenko, T.R. Clauss, and R.J. Moore, et al. 2020. "Proteogenomic characterization of ovarian HGSC implicates mitotic kinases, replication stress in observed chromosomal instability." Cell Reports Medicine 1, no. 1:Article No. 100004. PNNL-SA-145681. doi:10.1016/j.xcrm.2020.100004
  • Nakayasu E.S., F. Syed, S. Tersey, M.A. Gritsenko, H.D. Mitchell, C. Chan, and J. Turatsinze, et al. 2020. "Comprehensive proteomics analysis of stressed human islets identifies GDF15 as a target for type 1 diabetes intervention." Cell Metabolism 31, no. 2:363-374.e6. PNNL-SA-150166. doi:10.1016/j.cmet.2019.12.005


  • Cuesta R., M.A. Gritsenko, V.A. Petyuk, A.K. Shukla, C. Tsai, T. Liu, and J.E. McDermott, et al. 2019. "Phosphoproteome Analysis Reveals Estrogen-ER pathway as a modulator of mTOR activity via DEPTOR." Molecular and Cellular Proteomics 18, no. 8:1607-1618. PNNL-SA-145628. doi:10.1074/mcp.RA119.001506
  • Horta M.A., N. Thieme, Y. Gao, K.E. Burnum-Johnson, C.D. Nicora, M.A. Gritsenko, and M.S. Lipton, et al. 2019. "Broad substrate-specific phosphorylation events are associated with the initial stage of plant cell wall recognition in Neurospora crassa." Frontiers in Microbiology 10. PNNL-SA-143199. doi:10.3389/fmicb.2019.02317
  • Moghieb A.M., L. Tesfay, S. Nie, M.A. Gritsenko, T.L. Fillmore, J.M. Jacobs, and R.D. Smith, et al. 2019. "A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification." Scientific Reports 9, no. 1:Article No. 7264. PNNL-SA-138022. doi:10.1038/s41598-019-43756-9
  • Nicora C.D., M.A. Gritsenko, A.K. Lipton, K.L. Wahl, and K.E. Burnum-Johnson. 2019. "Proteomic Sample Preparation Techniques: Towards Forensic Proteomic Applications." In Applications in Forensic Proteomics: Protein Identification and Profiling. ACS Symposium Series, edited by E.D. Merkley. 29-46. Washington D.C.:American Chemical Society. PNNL-SA-143184.  doi:10.1021/bk-2019-1339.ch003
  • Stevens S., T. Liu, F.R. Bahjat, V.A. Petyuk, A.A. Schepmoes, R.L. Sontag, and M.A. Gritsenko, et al. 2019. "Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia that Is Associated with Neuroprotection." Translational Stroke Research 10, no. 4:440-448. PNWD-SA-10567. doi:10.1007/s12975-018-0670-7
  • Stevens S.L., T. Liu, F.R. Bahjat, V.A. Petyuk, A.A. Schepmoes, R.L. Sontag, and M.A. Gritsenko, et al. 2019. "Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia That Is Associated With Neuroprotection." Translational Stroke Research 10, no. 4:440-448. PNNL-SA-153569. doi:10.1007/s12975-018-0670-7
  • Yi L., C. Tsai, E. Dirice, A.C. Swensen, J. Chen, T. Shi, and M.A. Gritsenko, et al. 2019. "Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells." Analytical Chemistry 91, no. 9:5794-5801. PNNL-SA-140381. doi:10.1021/acs.analchem.9b00024


  • Kedia K., J.P. Wendler, E.M. Baker, K.E. Burnum-Johnson, L.G. Jarsberg, K.G. Stratton, and A.T. Wright, et al. 2018. "Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis." Tuberculosis 112. PNNL-SA-137966. doi:10.1016/
  • Mertins P., L.C. Tang, K. Krug, D.J. Clark, M.A. Gritsenko, L. Chen, and K. Clauser, et al. 2018. "Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry." Nature Protocols 13, no. 7:1632-1661. PNNL-SA-137930. doi:10.1038/s41596-018-0006-9
  • Piehowski P.D., V.A. Petyuk, R.L. Sontag, M.A. Gritsenko, K.K. Weitz, T.L. Fillmore, and J.S. Moon, et al. 2018. "Residual tissue repositories as a resource for population-based cancer proteomic studies." Clinical Proteomics 15. PNNL-SA-130920. doi:10.1186/s12014-018-9202-4
  • Stanfill B.A., E.S. Nakayasu, L.M. Bramer, A.M. Thompson, C.K. Ansong, T. Clauss, and M.A. Gritsenko, et al. 2018. "Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data." Molecular and Cellular Proteomics 17, no. 9:1824-1836. PNNL-SA-129934. doi:10.1074/mcp.RA118.000648
  • Yi L., T. Shi, M.A. Gritsenko, C. Chan, T.L. Fillmore, B.M. Hess, and A.C. Swensen, et al. 2018. "Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway." Analytical Chemistry 90, no. 8:5256-5263. PNNL-SA-131519. doi:10.1021/acs.analchem.8b00071


  • Eisfeld A.J., P. Halfmann, J.P. Wendler, J.E. Kyle, K.E. Burnum-Johnson, Z. Peralta, and T. Maemura, et al. 2017. "Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis." Cell Host & Microbe 22, no. 6:817-829. PNNL-SA-120881. doi:10.1016/j.chom.2017.10.011
  • Song E., Y. Gao, C. Wu, T. Shi, S. Nie, T.L. Fillmore, and A.A. Schepmoes, et al. 2017. "Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer." Scientific Data. PNNL-SA-122408. doi:10.1038/sdata.2017.91
  • Wang S., F. Yang, V.A. Petyuk, A.K. Shukla, M.E. Monroe, M.A. Gritsenko, and K.D. Rodland, et al. 2017. "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease." The Journal of Pathology243, no. 1:78-88. PNNL-SA-119241. doi:10.1002/path.4929


  • Burnum-Johnson K.E., S. Nie, C.P. Casey, M.E. Monroe, D.J. Orton, Y.M. Ibrahim, and M.A. Gritsenko, et al. 2016. "Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry." Molecular and Cellular Proteomics 15, no. 12:3694-3705. PNNL-SA-118308. doi:10.1074/mcp.M116.061143
  • Chan C., M.A. Gritsenko, R.D. Smith, and W. Qian. 2016. "The Current State-of-the-Art of Quantitative Phosphoproteomics and Its Applications to Diabetes Research." Expert Review of Proteomics 13, no. 4:421-433. PNNL-SA-115406. doi:10.1586/14789450.2016.1164604
  • Gritsenko M.A., Z. Xu, T. Liu, and R.D. Smith. 2016. "Large-Scale and Deep Quantitative Proteome Profiling Using Isobaric Labeling Coupled with Two-Dimensional LC-MS/MS." In Quantitative Proteomics by Mass Spectrometry, 2nd edition. Series: Methods in Molecular Biology, edited by S Sechi. 237-247. New York, New York:Springer. PNNL-SA-107351. 
  • Liberton M.L., R. Saha, J.M. Jacobs, A.Y. Nguyen, M.A. Gritsenko, R.D. Smith, and D.W. Koppenaal, et al. 2016. "Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium." Molecular and Cellular Proteomics 15, no. 6:2021-2032. PNNL-SA-121062. doi:10.1074/mcp.M115.057240
  • Liberton M.L., R. Saha, J.M. Jacobs, A.Y. Nguyen, M.A. Gritsenko, R.D. Smith, and D.W. Koppenaal, et al. 2016. "Proteomics analysis of isolated plasma membrane and thylakoid membrane from Synechocystis sp. PCC 6803." Molecular and Cellular Proteomics 15, no. 6:2021-2032. PNNL-SA-112674. doi:10.1074/mcp.M115.057240
  • Quaamari A., E. Dirice, N. Gedeon, J. Hu, J. Zhou, J. Shirakawa, and L. Hou, et al. 2016. "SerpinB1 Promotes Pancreatic ß Cell Proliferation." Cell Metabolism 23, no. 1:194-205. PNNL-SA-114412. doi:10.1016/j.cmet.2015.12.001
  • Velasquez C., E. Cheng, M. Shuda, P.J. Lee-Oesterreich, L. Pogge von Strandmann, M.A. Gritsenko, and J.M. Jacobs, et al. 2016. "Mitotic protein kinase CDK1 phosphorylation of mRNA translation regulator 4E-BP1 Ser83 may contribute to cell transformation." Proceedings of the National Academy of Sciences of the United States of America vol. 113, no. 30:8466-8471. PNNL-SA-116951. doi:10.1073/pnas.1607768113
  • Zhang H., T. Liu, Z. Zhang, S.H. Payne, B. Zhang, J.E. McDermott, and J. Zhou, et al. 2016. "Integrated proteogenomic characterization of human high grade serous ovarian cancer." Cell 166, no. 3:755-765. PNNL-SA-107151. doi:10.1016/j.cell.2016.05.069


  • Bhatt S., M. Gupta, M. Khamaisi, R. Martinez, M.A. Gritsenko, B. Wagner, and P. Guye, et al. 2015. "Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes." Cell Metabolism 22, no. 2:239-252. PNNL-SA-113658. doi:10.1016/j.cmet.2015.07.015
  • Kebaabetswe L.P., A.K. Haick, M.A. Gritsenko, T.L. Fillmore, R.K. Chu, S.O. Purvine, and B.M. Webb-Robertson, et al. 2015. "Proteomic Analysis Reveals Down-Regulation of Surfactant Protein B in Murine Type II Pneumocytes Infected with Influenza A Virus." Virology 438. PNWD-SA-10439. doi:10.1016/j.virol.2015.03.045


  • Aevermann B., B.E. Pickett, S. Kumar, E.B. Klem, S. Agnihothram, P.S. Askovich, and A. Bankhead, et al. 2014. "A Comprehensive Collection of Systems Biology Data Characterizing the Host Response to Viral Infection." Scientific Data 1. PNNL-SA-101269. doi:10.1038/sdata.2014.33
  • Baker E.S., K.E. Burnum-Johnson, J.M. Jacobs, D.L. Diamond, R.N. Brown, Y.M. Ibrahim, and D.J. Orton, et al. 2014. "Advancing the High Throughput Identification of Liver Fibrosis Protein Signatures Using Multiplexed Ion Mobility Spectrometry." Molecular and Cellular Proteomics 13, no. 4:1119-1127. PNNL-SA-90826. doi:10.1074/mcp.M113.034595
  • Dominy S., J.N. Brown, M.I. Ryder, M.A. Gritsenko, J.M. Jacobs, and R.D. Smith. 2014. "Proteomic Analysis of Saliva in HIV-positive Heroin Addicts Reveals Proteins Correlated with Cognition." PLoS One 9, no. 4:e89366. PNNL-SA-95909. doi:10.1371/journal.pone.0089366
  • He J., X. Sun, T. Shi, A.A. Schepmoes, T.L. Fillmore, V.A. Petyuk, and F. Xie, et al. 2014. "Antibody-independent Targeted Quantification of TMPRSS2-ERG Fusion Protein Products in Prostate Cancer." Molecular Oncology 8, no. 7:1169-1180. PNNL-SA-97917. doi:10.1016/j.molonc.2014.02.004
  • Mertins P., F. Yang, T. Liu, D. Mani, V.A. Petyuk, M. Gillette, and K. Clauser, et al. 2014. "Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels." Molecular & Cellular Proteomics. MCP13, no. 7:1690-1704. PNNL-SA-98702. doi:10.1074/mcp.M113.036392
  • Shi T., Y. Gao, M.J. Gaffrey, C.D. Nicora, T.L. Fillmore, W.B. Chrisler, and M.A. Gritsenko, et al. 2014. "Sensitive Targeted Quantification of ERK Phosphorylation Dynamics and Stoichiometry in Human Cells without Affinity Enrichment." Analytical Chemistry 87, no. 2:1103-1110. PNNL-SA-103421. doi:10.1021/ac503797x
  • Welkie D.G., X. Zhang, L.M. Markillie, R.C. Taylor, G. Orr, J.M. Jacobs, and K. Bhide, et al. 2014. "Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light-dark cycle." BMC Genomics15. PNNL-SA-104956. 
  • Xiong Y., S.T. Coradetti, X. Li, M.A. Gritsenko, T.R. Clauss, V.A. Petyuk, and D.G. Camp, et al. 2014. "The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation." Fungal Genetics and Biology : FG & B 72. PNNL-SA-103196. doi:10.1016/j.fgb.2014.05.005


  • Duijvesz D., K.E. Burnum-Johnson, M.A. Gritsenko, M. Hoogland, M.S. Vredenbregt-van den Berg, R. Willemsen, and T.n. Luider, et al. 2013. "Proteomic Profiling of Exosomes Leads to the Identification of Novel Biomarkers for Prostate Cancer." PLoS One 8, no. 12:Article No. e82589. PNNL-SA-88219. doi:10.1371/journal.pone.0082589
  • Finnerty C.C., M.G. Jeschke, W. Qian, A. Kaushal, W. Xiao, T. Liu, and M.A. Gritsenko, et al. 2013. "DETERMINATION OF BURN PATIENT OUTCOME BY LARGE-SCALE QUANTITATIVE DISCOVERY PROTEOMICS." Critical Care Medicine 41, no. 6:1421-1434. PNWD-SA-9845. doi:10.1097/CCM.0b013e31827c072e
  • Matzke M.M., J.N. Brown, M.A. Gritsenko, T.O. Metz, J.G. Pounds, K.D. Rodland, and A.K. Shukla, et al. 2013. "A Comparative Analysis of Computational Approaches to Relative Protein Quantification Using Peptide Peak Intensities in Label-free LC-MS Proteomics Experiments." Proteomics 13, no. 3-4:493-503. PNNL-SA-88866. doi:10.1002/pmic.201200269
  • Nakayasu E.S., R. Tempel, X.A. Cambronne, V.A. Petyuk, M.B. Jones, M.A. Gritsenko, and M.E. Monroe, et al. 2013. "Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection." Molecular and Cellular Proteomics 12, no. 11:3297-3309. PNNL-SA-93942. doi:10.1074/mcp.M113.029850
  • Zhang Q., T.L. Fillmore, A.A. Schepmoes, T.R. Clauss, M.A. Gritsenko, P.W. Mueller, and M. Rewers, et al. 2013. "Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes." The Journal of Experimental Medicine 210, no. 1:191-203. PNNL-SA-89853. doi:10.1084/jem.20111843


  • Angel T.E., J.M. Jacobs, R.P. Smith, M.S. Pasternack, S. Elias, M.A. Gritsenko, and A.K. Shukla, et al. 2012. "Cerebrospinal Fluid Proteome of Patients with Acute Lyme Disease." Journal of Proteome Research 11, no. 10:4814-4822. PNNL-SA-79143. doi:10.1021/pr300577p
  • Angel T.E., J.M. Jacobs, S.S. Spudich, M.A. Gritsenko, D. Fuchs, T. Liegler, and H. Zetterberg, et al. 2012. "The cerebrospinal fluid proteome in HIV infection: change associated with disease severity." Clinical Proteomics 9. PNNL-SA-81597. doi:10.1186/1559-0275-9-3
  • Aryal U.K., J. Stockel, E.A. Welsh, M.A. Gritsenko, C.D. Nicora, D.W. Koppenaal, and R.D. Smith, et al. 2012. "Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light." Journal of Proteome Research 11, no. 2:609-619. PNNL-SA-80375. doi:10.1021/pr200959x
  • Brown J.N., G.M. Ortiz, T.E. Angel, J.M. Jacobs, M.A. Gritsenko, E.Y. Chan, and D.E. Purdy, et al. 2012. "Morphine Produces Immunosuppressive Effects in Non-human Primates at the Proteomic and Cellular Levels." Molecular & Cellular Proteomics. MCP 11, no. 9:605-618. PNNL-SA-83778. doi:10.1074/mcp.M111.016121
  • Diamond D.L., A. Krasnoselski, K.E. Burnum, M.E. Monroe, B.M. Webb-Robertson, J.E. McDermott, and M.M. Yeh, et al. 2012. "Proteome and Computational Analyses Reveal New Insights into the Mechanisms of Hepatitis C Virus Mediated Liver Disease Posttransplantation." Hepatology 56, no. 1:28-38. PNWD-SA-9552. doi:10.1002/hep.25649
  • Nguyen T.H., L. Brechenmacher, J.T. Aldrich, T.R. Clauss, M.A. Gritsenko, K.K. Hixson, and M. Libault, et al. 2012. "Quantitative Phosphoproteomic Analysis of Soybean Root Hairs Inoculated with Bradyrhizobium japonicum." Molecular & Cellular Proteomics. MCP 11, no. 11:1140-1155. PNNL-SA-86415. doi:10.1074/mcp.M112.018028
  • Rutledge A.C., G. Fontes, M.A. Gritsenko, A.D. Norbeck, D.J. Anderson, K.M. Waters, and J.N. Adkins, et al. 2012. "Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics." Journal of Proteome Research 11, no. 7:3520-32. PNNL-SA-77193. doi:10.1021/pr3002996
  • Shi T., J. Zhou, M.A. Gritsenko, M. Hossain, D.G. Camp, R.D. Smith, and W. Qian. 2012. "IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography-mass spectrometry for human plasma proteomic biomarker discovery." Methods 56, no. 2:246-253. PNNL-SA-80317. doi:10.1016/j.ymeth.2011.09.001


  • Aryal U.K., J. Stockel, R.K. Krovvidi, M.A. Gritsenko, M.E. Monroe, R.J. Moore, and D.W. Koppenaal, et al. 2011. "Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles." BMC Systems Biology 5. PNNL-SA-81418. doi:10.1186/1752-0509-5-194
  • Dresang L.R., J.R. Teuton, H. Feng, J.M. Jacobs, D.G. Camp, S.O. Purvine, and M.A. Gritsenko, et al. 2011. "Coupled Transcriptome and Proteome Analysis of Human Lymphotropic Tumor Viruses: Insights on the Detection and Discovery of Viral Genes." BMC Genomics 12. PNNL-SA-84775. doi:10.1186/1471-2164-12-625
  • Stockel J., J.M. Jacobs, T.R. Elvitigala, M.L. Liberton, E.A. Welsh, A.D. Polpitiya, and M.A. Gritsenko, et al. 2011. "Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142." PLoS One 6, no. 2:Article No.: e16680. PNNL-SA-78209. doi:10.1371/journal.pone.0016680
  • Wang Y., F. Yang, M.A. Gritsenko, Y. Wang, T.R. Clauss, T. Liu, and Y. Shen, et al. 2011. "Reversed-Phase Chromatography with Multiple Fraction Concatenation Strategy for Proteome Profiling of Human MCF10A Cells." Proteomics 11, no. 10:2019-2026. PNNL-SA-75439. doi:10.1002/pmic.201000722
  • Wang Y., F. Yang, Y. Fu, X. Huang, W. Wang, X. Jiang, and M.A. Gritsenko, et al. 2011. "Spatial Phosphoprotein Profiling Reveals a Compartmentalized Extracellular Signal-regulated Kinase Switch Governing Neurite Growth and Retraction." Journal of Biological Chemistry286, no. 20:18190-18201. PNNL-SA-79165. 
  • Waters K.M., J.M. Jacobs, M.A. Gritsenko, and N.J. Karin. 2011. "Regulation of gene expression and subcellular protein distribution in MLO-Y4 osteocytic cells by lysophosphatidic acid: Relevance to dendrite outgrowth." Bone 48, no. 6:1328-35. PNNL-SA-74808. doi:10.1016/j.bone.2011.02.020
  • Yoon H., C. Ansong, J.E. McDermott, M.A. Gritsenko, R.D. Smith, F. Heffron, and J.N. Adkins. 2011. "Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella." BMC Systems Biology 5. PNNL-SA-77197. doi:10.1186/1752-0509-5-100
  • Zhang Q., M.E. Monroe, A.A. Schepmoes, T.R. Clauss, M.A. Gritsenko, D. Meng, and V.A. Petyuk, et al. 2011. "Comprehensive Identification of Glycated Peptides and Their Glycation Motifs in Plasma and Erythrocytes of Control and Diabetic Subjects." Journal of Proteome Research 10, no. 7:3076-3088. PNNL-SA-77801. 


  • Brown J.N., R. Palermo, C.R. Baskin, M.A. Gritsenko, P.J. Sabourin, P.J. Sabourin, and J.P. Long, et al. 2010. "Macaque Proteome Response to Highly Pathogenic Avian Influenza and 1918 Reassortant Influenza Virus Infections." Journal of Virology 84, no. 22:12058-12068. PNWD-SA-9238. 
  • Diamond D.L., A.J. Syder, J.M. Jacobs, C.M. Sorensen, K. Walters, S. Proll, and J.E. McDermott, et al. 2010. "Temporal Proteome and Lipidome Profiles Reveal HCV-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics." PLoS Pathogens 6, no. 1:Art. No. e1000719. PNWD-SA-8678. doi:10.1371/journal.ppat.1000719
  • Shen Y., N. Tolic, T. Liu, R. Zhao, B.O. Petritis, M.A. Gritsenko, and D.G. Camp, et al. 2010. "Blood Peptidome-Degradome Profile of Breast Cancer." PLoS One 5, no. 10:Article No.: e13133. PNNL-SA-70095. doi:10.1371/journal.pone.0013133
  • Sigdel T.K., A. Kaushal, M.A. Gritsenko, A.D. Norbeck, W. Qian, W. Xiao, and D.G. Camp, et al. 2010. "Shotgun Proteomics Identifies Proteins Specific for Acute Renal Transplant Rejection." Proteomics - Clinical Applications 4, no. 1:32-47. PNNL-SA-68069. doi:10.1002/prca.200900124
  • Wegener K.M., A.K. Singh, J.M. Jacobs, T.R. Elvitigala, E.A. Welsh, N.S. Keren, and M.A. Gritsenko, et al. 2010. "Global Proteomics Reveal An Atypical Strategy for Carbon/Nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations." Molecular & Cellular Proteomics. MCP 9, no. 12:2678-89. PNNL-SA-67041. doi:10.1074/mcp.M110.000109
  • Yang F., K.M. Waters, J.H. Miller, M.A. Gritsenko, R. Zhao, X. Du, and E.A. Livesay, et al. 2010. "Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation." PLoS One 5, no. 11:e14152. PNNL-SA-73768. doi:10.1371/journal.pone.0014152
  • Zhang H., R.N. Brown, W. Qian, M.E. Monroe, S.O. Purvine, R.J. Moore, and M.A. Gritsenko, et al. 2010. "Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling." Journal of Proteome Research 9, no. 5:2160-2169. PNNL-SA-67314. 


  • Qian W., T. Liu, V.A. Petyuk, M.A. Gritsenko, B.O. Petritis, A.D. Polpitiya, and A. Kaushal, et al. 2009. "Large-Scale Multiplexed Quantitative Discovery Proteomics Enabled by the Use of an O-18-Labeled “Universal” Reference Sample." Journal of Proteome Research 8, no. 1:290-299. PNNL-SA-57317. 
  • Yang F., S. Wu, D.L. Stenoien, R. Zhao, M.E. Monroe, M.A. Gritsenko, and S.O. Purvine, et al. 2009. "Combined Pulsed-Q dissociation and electron transfer dissociation for identification and quantitation of iTRAQ-labeled phosphopeptides." Analytical Chemistry 81, no. 10:4137-4143. PNNL-SA-63701. doi:10.1021/ac802605m


  • Ham B.M., F. Yang, H. Jayachandran, N. Jaitly, M.E. Monroe, M.A. Gritsenko, and E.A. Livesay, et al. 2008. "The Influence of Sample Preparation and Replicate Analyses on HeLa Cell Phosphoproteome Coverage." Journal of Proteome Research 7, no. 6:2215-2221. PNWD-SA-7904. 
  • Metz T.O., W. Qian, J.M. Jacobs, M.A. Gritsenko, R.J. Moore, A.D. Polpitiya, and M.E. Monroe, et al. 2008. "Application of proteomics in the discovery of candidate protein biomarkers in a Diabetes Autoantibody Standardization Program sample subset." Journal of Proteome Research 7, no. 2:698-707. PNNL-SA-56533. doi:10.1021/pr700606w
  • Pertz O.C., Y. Wang, F. Yang, W. Wang, l.J. gay, M.A. Gritsenko, and T.R. Clauss, et al. 2008. "“Spatial Mapping of the Neurite and Soma Proteomes Reveals a Functional Cdc42/Rac Regulatory Network”." Proceedings of the National Academy of Sciences of the United States of America 105, no. 6:1931-1936. PNNL-SA-58516. doi:10.1073/pnas.0706545105
  • Petyuk V.A., W. Qian, C. Hinault, M.A. Gritsenko, M. Singhal, M.E. Monroe, and D.G. Camp, et al. 2008. "Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues." Journal of Proteome Research 7, no. 8:3114-3126. PNNL-SA-58155. doi:10.1021/pr800205b


  • Chan E.Y., W. Qian, D.L. Diamond, T. Liu, M.A. Gritsenko, M.E. Monroe, and D.G. Camp, et al. 2007. "Quantitative analysis of human immunodeficiency virus type 1-infected CD4(+) cell proteome: Dysregulated cell cycle progression and nuclear transport coincide with robust virus production." Journal of Virology 81, no. 14:7571-7583. PNWD-SA-7667. 
  • Diamond D.L., J.M. Jacobs, B. Paeper, S. Proll, M.A. Gritsenko, R.L. Carithers, Jr., and A.M. Larson, et al. 2007. "Proteomic Profiling of Human Liver Biopsies: Hepatitis C Virus-Induced Fibrosis and Mitochondrial Dysfunction." Hepatology 46, no. 3:649-657. PNWD-SA-7685. doi:10.1002/hep.21751
  • Yang F., D.G. Camp, M.A. Gritsenko, Q. Luo, R.T. Kelly, T.R. Clauss, and W.R. Brinkley, et al. 2007. "Identification of a novel mitotic phosphorylation motif associated with protein localization to the mitotic apparatus." Journal of Cell Science 120, no. 22:4060-70. PNNL-SA-55602. doi:10.1242/jcs.014795
  • Yang F., N. Jaitly, H. Jayachandran, Q. Lou, M.E. Monroe, X. Du, and M.A. Gritsenko, et al. 2007. "Applying a Targeted Label-free Approach using LC-MS AMT Tags to Evaluate Changes in Protein Phosphorylation Following Phosphatase Inhibition." Journal of Proteome Research 6, no. 11:4489-4497. PNNL-SA-52332. doi:10.1021/pr070068e


  • Baas T., C.R. Baskin, D.L. Diamond, A. Garcia-Sastre, H. Bielefeldt-Ohmann, T.M. Tumpey, and M.J. Thomas, et al. 2006. "Integrated Molecular Signature of Disease: Analysis of Influenza Virus-Infected Macaques through Functional Genomics and Proteomics." Journal of Virology80, no. 21:10813 (16 pages). PNWD-SA-7379. doi:10.1128/JVI.00851-06
  • Liu T., W. Qian, H.M. Mottaz, M.A. Gritsenko, A.D. Norbeck, R.J. Moore, and S.O. Purvine, et al. 2006. "Evaluation of Multi-Protein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry." Molecular & Cellular Proteomics. MCP 5, no. 11:2167-2174. PNWD-SA-7363. 
  • Liu T., W. Qian, M.A. Gritsenko, W. Xiao, L.L. Moldawer, A. Kaushal, and M.E. Monroe, et al. 2006. "High Dynamic Range Characterization of the Trauma Patient Plasma Proteome." Molecular & Cellular Proteomics. MCP 5, no. 10:1899-1913. PNWD-SA-7271. doi:10.1074/mcp.M600068-MCP200
  • Metz T.O., J.M. Jacobs, M.A. Gritsenko, G. Fontes, W. Qian, D.G. Camp, and V.J. Poitout, et al. 2006. "Characterization of the Human Pancreatic Islet Proteome by Two-Dimensional LC/MS/MS." Journal of Proteome Research 5, no. 12:3345-3354. PNNL-SA-49730. doi:10.1021/pr060322n
  • Wang H.H., W. Qian, M.H. Chin, V.A. Petyuk, R.C. Barry, T. Liu, and M.A. Gritsenko, et al. 2006. "Characterization of the Mouse Brain Proteome Using Global Proteomic Analysis Complemented with Cysteinyl-Peptide Enrichment." Journal of Proteome Research 5, no. 2:361-369. PNNL-SA-46752. 
  • Yang F., D.L. Stenoien, E.F. Strittmatter, J. Wang, L. Ding, M.S. Lipton, and M.E. Monroe, et al. 2006. "Phosphoproteome Profiling of Human Skin Fibroplast Cells in Response to Low- and High-Dose Irradiation." Journal of Proteome Research 5, no. 5:1252-1260. PNNL-SA-46275. 
  • Zhang W., D.E. Culley, M.A. Gritsenko, R.J. Moore, L. Nie, J.C. Scholten, and K. Petritis, et al. 2006. "LC-MS/MS based proteomic analysis and functional inference of hypothetical proteins in Desulfovibrio vulgaris." Biochemical and Biophysical Research Communications 349, no. 4:1412-1419. PNNL-SA-45667. doi:10.1016/j.bbrc.2006.09.019
  • Zhang W., D.E. Culley, M.A. Gritsenko, R.J. Moore, L. Nie, J.C. Scholten, and K. Petritis, et al. 2006. "LC-MS/MS Based Proteomic Analysis and Functional Inference of Hypothetical Proteins in Desulfovibrio Vulgaris." Biochemical and Biophysical Research Communications349, no. 4:1412-1419. PNNL-SA-51397. doi:10.1016/j.bbrc.2006.09.019
  • Zhang W., M.A. Gritsenko, R.J. Moore, D.E. Culley, L. Nie, K. Petritis, and E.F. Strittmatter, et al. 2006. "A Proteomic View of Desulfovibrio Vulgaris Metabolim as Determined by Liquid Chromatography Coupled with Tandem Mass Spectrometry." Proteomics 6, no. 15:4286-4299. PNNL-SA-45506. doi:10.1002/pmic.200500930


  • Hulme J.T., K. Konoki, T. Lin, M.A. Gritsenko, D.G. Camp, D.J. Bigelow, and W. Catterall. 2005. "Sites of Proteolytic Processing and Noncovalent Association of the Distal C-terminal Domain of CaV1.1 Channels in Skeletal Muscle." Proceedings of the National Academy of Sciences of the United States of America 102, no. 14:5274-5279. PNNL-SA-43846. doi:10.1073/pnas.0409885102
  • Jacobs J.M., D.L. Diamond, E.Y. Chan, M.A. Gritsenko, W. Qian, M. Stastna, and T. Baas, et al. 2005. "Proteome Analysis of Liver Cells Expressing a Full- Length Hepatitis C Virus (HCV) Replicon and Biopsy Specimens of Posttransplantation Liver from HCV-Infected Patients." Journal of Virology 79, no. 12:7558-7569. PNWD-SA-6678. 
  • Liu T., W. Qian, M.A. Gritsenko, D.G. Camp, M.E. Monroe, R.J. Moore, and R.D. Smith. 2005. "Human Plasma N-Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry." Journal of Proteome Research 4, no. 6:2070-2080. PNNL-SA-44967. 
  • Liu T., W. Qian, W.U. Chen, J.M. Jacobs, R.J. Moore, D.J. Anderson, and M.A. Gritsenko, et al. 2005. "Improved Proteome Coverage by Using High Efficiency Cysteinyl-peptide Enrichment: The Human Mammary Epithelial Cell Proteome." Proteomics 5, no. 5:1263-1273. PNNL-SA-42468. 
  • Qian W., J.M. Jacobs, D.G. Camp, M.E. Monroe, R.J. Moore, M.A. Gritsenko, and S.E. Calvano, et al. 2005. "Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry." Proteomics 5, no. 2:572-584. PNNL-SA-40692. doi:10.1002/pmic.200400942
  • Yang F., B. Bogdanov, E.F. Strittmatter, A.N. Vilkov, M.A. Gritsenko, L. Shi, and D.A. Elias, et al. 2005. "Characterization of purified c-type heme-containing peptides and identification of c-type heme-attachment sites in Shewanella oneidenis cytochromes using mass spectrometry." Journal of Proteome Research 4, no. 3:846-854. PNNL-SA-43808. doi:10.1021/pr0497475


  • Prokisch H., C.M. Scharfe, D.G. Camp, W. Xiao, L. David, C. Andreoli, and M.E. Monroe, et al. 2004. "Integrative Analysis of the Mitochondrial Proteome in Yeast." PLoS Biology 2, no. 6:0795-0804. PNWD-SA-6619.