December 26, 2019
Journal Article

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Abstract

Drought is the most important environmental stress limiting crop yields. The C4 cereal, Sorghum bicolor, is a critical food, forage, and emerging bioenergy crop that is notably drought-tolerant. We conducted a large-scale field experiment, imposing pre- and post-flowering drought stress on two genotypes of S. bicolor across a tightly-resolved time series, resulting in a data set of over 350 transcriptomes. We observed a fast and global transcriptomic response in leaf and root tissues with clear temporal patterns, including modulation of well-known drought pathways. We identified genotypic differences in core photosynthesis and reactive oxygen species scavenging pathways, highlighting possible mechanisms of drought tolerance and of the delayed senescence, stay-green phenotype. Finally, we discovered a large scale depletion in the expression of genes critical to arbuscular mycorrhizal (AM) symbiosis, with a corresponding drop in AM fungal mass in the plants’ rhizosphere.

Revised: January 16, 2020 | Published: December 26, 2019

Citation

Varoquaux N., B. Cole, C. Gao, G. Pierroz, C. Baker, D. Patel, and M. Madera, et al. 2019. Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses. Proceedings of the National Academy of Sciences (PNAS) 116, no. 52:27124-27132. PNNL-SA-140530. doi:10.1073/pnas.1907500116