September 27, 2024
Journal Article

Simple and effective Squash-PCR for rapid genotyping of industrial microalgae

Abstract

Microalgae are recognized for their versatility in providing renewable energy, biopharmaceuticals, and nutraceuticals, attributed to their sustainable, renewable, and cost-effective nature. Genetic engineering has proven highly effective in enhancing microalgae production. PCR-based genotyping is the primary method for screening genetically transformed microalgae cells. Recently, we developed a novel PCR method, namely Squash-PCR, and employed it for the molecular analysis of industrially important fungi and yeasts. In this study, we successfully implemented the Squash-PCR technique in 12 industrially significant algae species. This approach offers a quick and reliable means of obtaining DNA templates directly from squashed algal cells, eliminating the need for time-consuming and labor-intensive cultivation and genomic DNA extraction steps. Our results demonstrate the effectiveness of Squash-PCR in detecting and characterizing target genes of interest in at least 12 different algae species. Overall, this study establishes the Squash-PCR method as a valuable tool for molecular studies in algae, enabling researchers to rapidly screen and manipulate genetic traits in diverse algal species.

Published: September 27, 2024

Citation

Yuan G., S. Gao, J.J. Czajka, Z. Dai, K.R. Pomraning, R.D. Duong, and B.A. Hofstad, et al. 2024. Simple and effective Squash-PCR for rapid genotyping of industrial microalgae. Life 14, no. 1:Art. No. 115. PNNL-SA-192108. doi:10.3390/life14010115

Research topics