PNNL

Abstract

Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to two ammonia (NH3) molecules. Catalysis involves the participation of two protein components designated the MoFe and Fe proteins. Electron transfer (ET) from the Fe protein to the catalytic MoFe protein involves a series of synchronized events requiring the transient association of one Fe protein with each aß half of the MoFe protein. This process is referred to as the Fe protein cycle and includes: binding of two ATP to an Fe protein, association of an Fe protein with the MoFe protein, ET from the Fe protein to the MoFe protein, hydrolysis of two ATP to two ADP and two Pi for each ET, Pi release, and dissociation of oxidized Fe protein-(ADP)2 from the MoFe protein. Because the MoFe protein tetramer has two separate aß active units, it has the capacity to participate in two independent Fe protein cycles. The present work examines whether the two catalytic halves of an individual MoFe protein function independently or, instead, communicate with each other during catalysis. Kinetic analyses of ET, ATP hydrolysis, and Pi release during the pre-steady state phase indicate that the two halves of the complex in fact cooperate. A global fit of the data is consistent with a two-branch negative-cooperativity kinetic model. A possible mechanism for communication between the two halves of nitrogenase is suggested by normal-mode calculations suggesting correlated and anti-correlated motions between the two nitrogenase halves.