Protection is a critical function in power systems to avoid equipment damage, maintain personnel safety, and support system reliability. However, current protective relay technology cannot adequately protect equipment and personnel from effects of some events; these deficiencies are termed protection gaps. In this research, a data-driven approach is proposed to complement traditional protection technology and distinguish fault conditions from transients caused by normal operations. A convolutional neural network (CNN) based fault detection approach is implemented to achieve data translation invariance of the time-series input data. As a result, the data-driven method can accurately detect system faults despite variation and noise in the input data. In addition, using the CNN–based method avoids the complicated manual feature extraction procedure required by many traditional data-driven methods. The effectiveness of the proposed approach is tested on four kinds of protection gaps: high impedance faults, transformer/generator inter-turn faults, distribution system PV circuit faults, and the mis-operation situations of Zone 3 line protection relays operating under system stress. Finally, a transfer learning method is also proposed to address the common issue of data-driven methods for which real-world training data are scarce. Extensive study results demonstrate that the proposed approach can accurately bridge power system protection gaps.