July 29, 2025
Journal Article

Using mid-infrared spectroscopy to predict soil microbial functions at the continental scale

Abstract

Understanding microbial community properties is critical to improving the predictions of biogeochemical processes for enhancing soil carbon sequestration. In this study, mid-infrared (MIR) spectroscopy and partial least squares regression was used to predict soil microbial and chemical properties from diverse ecosystems across the continental USA. Random calibration and validation demonstrated the prediction potential for soil properties using MIR spectra, with the strongest predictions for microbial respiration, followed by microbial biomass carbon and nitrogen, ß-glucosidase activity, as well as soil chemical properties including organic carbon and total nitrogen. Microbial properties were mainly positively correlated to spectral regions associated with aliphatic C-H groups and C=O stretches of polysaccharides and negatively correlated to quartz and silicate-associated regions. We conclude that MIR spectroscopy can characterize soil microbial functions and be useful for the improvement of continental-scale soil carbon modeling and prediction programs.

Published: July 29, 2025

Citation

Ghimire S., Y. Zhang, J. Huang, E.L. Majumder, A.E. Hatemink, E.B. Graham, and O. Qafoku, et al. 2025. Using mid-infrared spectroscopy to predict soil microbial functions at the continental scale. Applied Soil Ecology 211, no. July 2025:Art. No. 106110. PNNL-SA-204460. doi:10.1016/j.apsoil.2025.106110

Research topics