Abstract
We present a new approach for peptide identification from a list of candidates using collision-induced  dissociation tandem mass spectrometry data. This approach is based on a probabilistic model for the  occurrence of spectral peaks corresponding to frequently observed partial peptide ions. As part of the  identification procedure, a probability score is produced that indicates the likelihood of any given candidate  being the correct match. The performance of the proposed algorithm is tested on a large test dataset  consisting of spectra from charge = 2+ tryptic peptides of different lengths ranging from 6-mers to 30-mers.  Initial results suggest that this approach works well with error rates typically below 5%.  
    Application Number
11/592,610
    Inventors
Jarman,Kenneth D
      Jarman,Kristin H
      Heredia-Langner,Alejandro
      Cannon,Bill
        Market Sector
Analytical Instruments