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Fundamental and Computational Sciences Directorate

Staff information

Lisa Bramer

Applied Statistics & Computational Modeling
Scientist, Team Lead
Pacific Northwest National Laboratory
PO Box 999
MSIN: K7-20
Richland, WA 99352

PNNL Publications


  • Liu CW, LM Bramer, BJM Webb-Robertson, K Waugh, M Rewers, and Q Zhang. 2018. "Temporal Expression Profiling of Plasma Proteins Reveals Oxidative Stress in Early Stages of Type 1 Diabetes Progression." Journal of Proteomics 172:100-110.  doi:10.1016/j.jprot.2017.10.004
  • Roy Chowdhury T, LM Bramer, DW Hoyt, YM Kim, TO Metz, LA McCue, HL Diefenderfer, JK Jansson, and VL Bailey. 2018. "Temporal dynamics of CO2 and CH4 loss potentials in response to rapid hydrological shifts in tidal freshwater wetland soils." Ecological Engineering 114:104-114.  doi:10.1016/j.ecoleng.2017.06.041


  • Graham EB, MM Tfaily, AR Crump, AE Goldman, LM Bramer, EV Arntzen, EB Romero, CT Resch, DW Kennedy, and JC Stegen. 2017. "Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes." Journal of Geophysical Research. Biogeosciences 122(12):3,188-3,205.  doi:10.1002/2017JG003967
  • Graham EB, MM Tfaily, AR Crump, AE Goldman, LM Bramer, EV Arntzen, EB Romero, CT Resch, DW Kennedy, and JC Stegen. 2017. "Carbon inputs from riparian vegetation limit oxidation of physically bound organic carbon via biochemical and thermodynamic processes." Journal of Geophysical Research. Biogeosciences 122(12):3188-3205.  doi:10.1002/2017JG003967
  • Bramer LM, J Rounds, CD Burleyson, DC Fortin, JE Hathaway, JS Rice, and IP Kraucunas. 2017. "Evaluating Penalized Logistic Regression Models to Predict Heat-Related Electric Grid Stress Days." Applied Energy 205:1408-1418.  doi:10.1016/j.apenergy.2017.09.087
  • Halfvarson J, CJ Brislawn, R Lamendella, Y Vazquez-Baeza, WA Walters, LM Bramer, M D'Amato, F Bonfiglio, D McDonald, A Gonzalez, EE Mcclure, MF Dunklebarger, R Knight, and JK Jansson. 2017. "Dynamics of the Human Gut Microbiome in Inflammatory Bowel Disease." Nature Microbiology 2(5):Article No. 17004.  doi:10.1038/nmicrobiol.2017.4
  • Liu CW, LM Bramer, BJM Webb-Robertson, K Waugh, M Rewers, and Q Zhang. 2017. "Temporal profiles of plasma proteome during childhood development." Journal of Proteomics 152:321-328.  doi:10.1016/j.jprot.2016.11.016
  • Madeen EP, CV Lohr, H You, LE Siddens, SK Krueger, RH Dashwood, FJ Gonzalez, WM Baird, E Ho, LM Bramer, KM Waters, and DE Williams. 2017. "Dibenzo[def,p]chrysene transplacental carcinogenesis in wild-type, Cyp1b1 knockout, and CYP1B1 humanized mice." Molecular Carcinogenesis 56(1):163-171.  doi:10.1002/mc.22480
  • Webb-Robertson BJM, LM Bramer, JL Jensen, MA Kobold, KG Stratton, AM White, and KD Rodland. 2017. "P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets." Cancer Research 77(21):e47-e50.  doi:10.1158/0008-5472.CAN-17-0335


  • Webb-Robertson BJM, LM Bramer, SM Reehl, TO Metz, Q Zhang, M Rewers, and B Frohnert. 2016. "ROFI - The use of Repeated Optimization for Feature Interpretation." In International Conference on Computational Science and Computational Intelligence (CSCI 2016), December 15-17, 206, Las Vegas, Nevada, ed. HR Arabnia, L Deligiannidis and M Yang.  IEEE, PISCATAWAY, NJ.  doi:10.1109/CSCI.2016.0013


  • Amidan BG, AM Venzin, and LM Bramer. 2015. Multiple Lines of EvidencePNNL-24245, Pacific Northwest National Laboratory, Richland, WA. 
  • Bramer LM, S Chatterjee, AE Holmes, SM Robinson, SF Bradley, and BJM Webb-Robertson. 2015. "A Machine Learning Approach for Business Intelligence Analysis using Commercial Shipping Transaction Data." In The 11th International Conference on Data Mining (DMIN 2015), July 27-30, 2015, Las Vegas, Nevada, pp. 162-167.  CSREA Press, ATHENS, GA. 
  • Hejazi MI, N Voisin, L Liu, LM Bramer, DC Fortin, JE Hathaway, M Huang, GP Kyle, LYR Leung, H Li, Y Liu, PL Patel, TC Pulsipher, JS Rice, TK Tesfa, CR Vernon, and Y Zhou. 2015. "21st Century United States Emissions Mitigation Could Increase Water Stress more than the Climate Change it is Mitigating." Proceedings of the National Academy of Sciences of the United States of America 112(34):10635-10640.  doi:10.1073/pnas.1421675112
  • Lafontaine S, J Schrlau, J Butler, Y Jia, BL Harper, SG Harris, LM Bramer, KM Waters, A Harding, and SL Simonich. 2015. "RELATIVE INFLUENCE OF TRANS-PACIFIC AND REGIONAL ATMOSPHERIC TRANSPORT OF PAHS IN THE PACIFIC NORTHWEST, U.S." Environmental Science & Technology 49(23):13807-13816.  doi:10.1021/acs.est.5b00800
  • Siddens LK, KL Bunde, TA Harper Jr., TJ McQuistan, CV Lohr, LM Bramer, KM Waters, SC Tilton, SK Krueger, DE Williams, and WM Baird. 2015. "Cytochrome P450 1b1 in Polycyclic Aromatic Hydrocarbon (PAH)-Induced Skin Carcinogenesis: Tumorigenicity of Individual PAHs and Coal-Tar Extract, DNA Adduction and Expression of Select Genes in the Cyp1b1 Knockout Mouse Toxicology and Applied Pharmacology." Toxicology and Applied Pharmacology 287(2):149-160.  doi:10.1016/j.taap.2015.05.019
  • Townsend P, Q Zhang, J Shapiro, BJM Webb-Robertson, LM Bramer, AA Schepmoes, KK Weitz, M Mallette, H Moniz, R Bright, M Merrick, SA Shah, BE Sands, and N Leleiko. 2015. "Serum Proteome Profiles in Stricturing Crohn’s Disease: A pilot study." Inflammatory Bowel Diseases 21(8):1935-41.  doi:10.1097/MIB.0000000000000445


  • Matzke BD, LLN Newburn, JE Hathaway, LM Bramer, JE Wilson, ST Dowson, LH Sego, and BA Pulsipher. 2014. Visual Sample Plan Version 7.0 User's Guide PNNL-23211, Pacific Northwest National Laboratory, Richland, WA. 
  • Webb-Robertson BJM, MM Matzke, S Datta, SH Payne, J Kang, LM Bramer, CD Nicora, AK Shukla, TO Metz, KD Rodland, RD Smith, MF Tardiff, JE McDermott, JG Pounds, and KM Waters. 2014. "Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements." Molecular and Cellular Proteomics 13(12):3639-3646.  doi:10.1074/mcp.M113.030932

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