Staff information

PNNL Publications

2025

• Huang D., J. Liao, J. Balcazar, M. Ye, R. Wu, D. Wang, and P.j. Alvarez, et al. 2025. "Adaptive Modification of Antiviral Defense Systems in Microbial Community under Cr-Induced Stress." Microbiome 13:Art No. 34. PNNL-SA-199842. doi:10.1186/s40168-025-02030-z
• Velickovic M., L. Kadam, J. Kim, K. Zemaitis, D. Velickovic, Y. Gao, and R. Wu, et al. 2025. "Advanced multi-modal mass spectrometry imaging reveals functional differences of placental villous compartments at microscale resolution." Nature Communications 16:Art. No. 2061. PNNL-SA-201502. doi:10.1038/s41467-025-57107-y

2024

• Graham E.B., A. Camargo, R. Wu, R.Y. Neches, M. Nolan, A. Paez-Espino, and N.C. Kyrpides, et al. 2024. "A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts." Nature Microbiology 9, no. 7:1873-1883. PNNL-SA-192887. doi:10.1038/s41564-024-01686-x
• Graham E.B., V.A. Garayburu-Caruso, R. Wu, J. Zheng, R.S. McClure, and G. Jones. 2024. "Genomic fingerprints of the world's soil ecosystems." mSystems 9, no. 6:Art. No. e01112-23. PNNL-SA-191207. doi:10.1128/msystems.01112-23
• Qi H., R. Wu, M. Ye, D. Huang, L. Wang, J. Liao, and P. Yu. 2024. "Symbiotic bacteriophages exhibit multiple adaptive strategies in activated sludge flocs and contribute to floc stability." Chemical Engineering Journal 492. PNNL-SA-188622. doi:10.1016/j.cej.2024.152448
• Wu R., A.E. Zimmerman, and K.S. Hofmockel. 2024. "The direct and indirect drivers shaping RNA viral communities in grassland soil." mSystems. PNNL-SA-191641. doi:10.1128/msystems.00099-24
• Wu R., M. Velickovic, and K.E. Burnum-Johnson. 2024. "From single cell to spatial multi-omics: unveiling molecular mechanisms in dynamic and heterogeneous systems." Current Opinion in Biotechnology 89, no. _:Art No. 103174. PNNL-SA-198316. doi:10.1016/j.copbio.2024.103174

2023

• Wu R., M.R. Davison, W.C. Nelson, M.L. Smith, M.S. Lipton, J.K. Jansson, and R.S. McClure, et al. 2023. "Hi-C metagenome sequencing reveals soil phage-host interactions." Nature Communications 14. PNNL-SA-181374. doi:10.1038/s41467-023-42967-z

2022

• Jansson J.K., and R. Wu. 2022. "Soil Viral Diversity, Ecology and Climate Change." Nature Reviews Microbiology 21. PNNL-SA-172770. doi:10.1038/s41579-022-00811-z
• Lee J., H.D. Mitchell, M.C. Burnet, R. Wu, S.C. Jenson, E.D. Merkley, and E.S. Nakayasu, et al. 2022. "Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics." Journal of Proteome Research 21, no. 8:2023-2035. PNNL-SA-138497. doi:10.1021/acs.jproteome.2c00334
• Wu R., C. Smith, G.W. Buchko, I.K. Blaby, A. Paez-Espino, N.C. Kyrpides, and Y. Yoshikuni, et al. 2022. "Structural characterization of a soil viral auxiliary metabolic gene product - a functional chitosanase." Nature Communications 13, no. 1:Art. No. 5485. PNNL-SA-170607. doi:10.1038/s41467-022-32993-8
• Wu R., E.M. Bottos, V.G. Danna, J.C. Stegen, J.K. Jansson, and M.R. Davison. 2022. "RNA Viruses Linked to Eukaryotic Hosts in Thawed Permafrost." mSystems 7, no. 6:Art. No. e00582-22. PNNL-SA-170030. doi:10.1128/msystems.00582-22
• Wu R., G. Trubl, N. Tas, and J.K. Jansson. 2022. "Permafrost as a potential pathogen reservoir." One Earth 5, no. 4:351-360. PNNL-SA-171378. doi:10.1016/j.oneear.2022.03.010

2021

• Wu R., M.R. Davison, W.C. Nelson, E.B. Graham, S.J. Fansler, Y. Farris, and S.L. Bell, et al. 2021. "DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes." mBio 12, no. 6:e02595-21. PNNL-SA-166275. doi:10.1128/mBio.02595-21
• Wu R., M.R. Davison, Y. Gao, C.D. Nicora, J.E. McDermott, K.E. Burnum-Johnson, and K.S. Hofmockel, et al. 2021. "Moisture Modulates Soil Reservoirs of Active DNA and RNA Viruses." Communications Biology 4, no. 1:992. PNNL-SA-160635. doi:10.1038/s42003-021-02514-2

2020

• Nelson W.C., L.N. Anderson, R. Wu, J.E. McDermott, S.L. Bell, A. Jumpponen, and S.J. Fansler, et al. 2020. "Terabase Metagenome Sequencing of Grassland Soil Microbiomes." Microbiology Resource Announcements 9, no. 32:Article No. e00718-20. PNNL-SA-153752. doi:10.1128/MRA.00718-20