Staff information

PNNL Publications

2024

• Sher A., J.A. Aufrecht, D. Herrera, A.E. Zimmerman, Y. Kim, N. Munoz Munoz, and J.B. Trejo, et al. 2024. "Dynamic nitrogen fixation in an aerobic endophyte of Populus." The ISME Journal 18, no. 1:Art. No. wrad012. PNNL-SA-189611. doi:10.1093/ismejo/wrad012

2023

• Baker C., D. Patel, B. Cole, L. Ching, O. Dautermann, A.C. Kelikian, and C. Allison, et al. 2023. "Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum." Plant Direct 7, no. 11:Art. No. e545. PNNL-SA-164384. doi:10.1002/pld3.545
• Bramer L.M., R. Hontz, A.J. Eisfeld, A.C. Sims, Y. Kim, K.G. Stratton, and C.D. Nicora, et al. 2023. "Multi-omics of NET Formation and Correlations with CNDP1, PSPB, and L-Cystine Levels in Severe and Mild COVID-19 Infections." Heliyon 9, no. 3:13795. PNNL-SA-169411. doi:10.1016/j.heliyon.2023.e13795
• Clendinen C.S., J.E. Flores, L.M. Bramer, D.J. Degnan, V.L. Paurus, and Y. Eberlim de Corilo. 2023. Enter Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics. PNNL-33865. Richland, WA: Pacific Northwest National Laboratory. Enter Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics
• Couvillion S.P., R.E. Danczak, D.T. Naylor, M.L. Smith, K.G. Stratton, V.L. Paurus, and K.J. Bloodsworth, et al. 2023. "Rapid remodeling of the soil lipidome in response to a drying-rewetting event." Microbiome 11, no. 2023:34. PNNL-SA-172149. doi:10.1186/s40168-022-01427-4
• Degnan D.J., J.E. Flores, E. Brayfindley, V.L. Paurus, B.M. Webb-Robertson, C.S. Clendinen, and L.M. Bramer. 2023. "Characterizing Families of Spectral Similarity Scores and their Use Cases for Gas Chromatography-Mass Spectrometry Small Molecule Identification." Metabolites 13, no. 10:Art. No. 1101. PNNL-SA-189894. doi:10.3390/metabo13101101
• Degnan D.J., L.M. Bramer, J.E. Flores, V.L. Paurus, Y. Eberlim de Corilo, and C.S. Clendinen. 2023. "Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification." Analytical Chemistry 95, no. 19:7536-7544. PNNL-SA-181303. doi:10.1021/acs.analchem.2c05783
• Dylag A.M., R. Misra, G. Bandyopadhyay, C. Poole, H.L. Huyck, M.G. Jehrio, and J. Haak, et al. 2023. "New Insights into the Natural History of Bronchopulmonary Dysplasia from Proteomics and Multiplexed Immunohistochemistry." American Journal of Physiology-Lung Cellular and Molecular Physiology 325, no. 4:L419-L433. PNNL-SA-187074. doi:10.1152/ajplung.00130.2023
• Hixson K.K., D.A. Fajardo, N.P. Devitt, J. Sena, M.A. Costa, Q. Meng, and C. Boschiero, et al. 2023. "Annotated genome sequence of a fast-growing diploid clone of red alder (Alnus rubra Bong.)." G3: Genes, Genomes, Genetics 13, no. 6. PNNL-SA-190327. doi:10.1093/g3journal/jkad060
• Hixson K.K., D.A. Fajardo, N.P. Devitt, J. Sena, M.A. Costa, Q. Meng, and C. Boschiero, et al. 2023. "Annotated Genome Sequence of a Fast-growing Diploid Clone of Red Alder (Alnus rubra Bong.)." G3: Genes, Genomes, Genetics 13, no. 6. PNNL-SA-190646. doi:10.1093/g3journal/jkad060
• Nakayasu E.S., M.A. Gritsenko, Y. Kim, J.E. Kyle, K.G. Stratton, C.D. Nicora, and N. Munoz Munoz, et al. 2023. "Elucidating regulatory processes of intense physical activity by multi-omics analysis." Military Medical Research 10, no. 1:48. PNNL-SA-158793. doi:10.1186/s40779-023-00477-5

2022

• Park J., S. Mani, G. Clair, H.M. Olson, V.L. Paurus, C.K. Ansong, and C. Blundell, et al. 2022. "A microphysiological model of human trophoblast invasion during implantation." Nature Communications 13, no. 1:1252. PNNL-SA-169569. doi:10.1038/s41467-022-28663-4

2021

• Chroumpi T., M. Peng, L. Markillie, H.D. Mitchell, C.D. Nicora, C.M. Hutchinson, and V.L. Paurus, et al. 2021. "Re-routing of sugar catabolism provides a better insight into fungal flexibility in using plant biomass-derived monomers as substrates." Frontiers in Bioengineering and Biotechnology 9. PNNL-SA-158642. doi:10.3389/fbioe.2021.644216
• Li X., N.J. Day, S. Feng, M.J. Gaffrey, T. Lin, V.L. Paurus, and M.E. Monroe, et al. 2021. "Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress." Redox Biology 46. PNNL-SA-163313. doi:10.1016/j.redox.2021.102111
• Velickovic D., R.K. Chu, C. Henkel, A. Nyhuis, N. Tao, J.E. Kyle, and J.N. Adkins, et al. 2021. "Preserved and variable spatial-chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade." Plant-Environment Interactions 2, no. 1:28-35. PNNL-SA-158820. doi:10.1002/pei3.10038