Staff information

PNNL Publications

2023

• Couvillion S.P., R.E. Danczak, D.T. Naylor, M.L. Smith, K.G. Stratton, V.L. Paurus, and K.J. Bloodsworth, et al. 2023. "Rapid remodeling of the soil lipidome in response to a drying-rewetting event." Microbiome 11, no. 2023:34. PNNL-SA-172149. doi:10.1186/s40168-022-01427-4
• Couvillion S.P., R.E. Danczak, X. Cao, Q. Yang, T.P. Keerthisinghe, R.S. McClure, and D. Bitounis, et al. 2023. "Graphene oxide exposure alters gut microbial community composition and metabolism in an in vitro human model." NanoImpact 30. PNNL-SA-177384. doi:10.1016/j.impact.2023.100463
• Leiser O.P., D.L. Auberry, E. Bakker, W.B. Chrisler, K.M. Engbrecht, H.E. Engelmann, and S.J. Fansler, et al. 2023. "Insights from a workplace SARS-CoV-2 specimen collection program, with genomes placed into global sequence phylogeny." PLoS One 18, no. 4:Art. No. e0285042. PNNL-SA-179220. doi:10.1371/journal.pone.0285042

2022

• Danczak R.E., A. Sengupta, S.J. Fansler, R.K. Chu, V.A. Garayburu-Caruso, L. Renteria, and J.G. Toyoda, et al. 2022. "Inferring the contribution of microbial taxa and organic matter molecular formulas to ecological assembly." Frontiers in Microbiology 13. PNNL-SA-169670. doi:10.3389/fmicb.2022.803420
• Stegen J.C., S.J. Fansler, M.M. Tfaily, V.A. Garayburu-Caruso, A.E. Goldman, R.E. Danczak, and R.K. Chu, et al. 2022. "Organic Matter Transformations are Disconnected Between Surface Water and the Hyporheic Zone." Biogeosciences 19, no. 12:3099-3110. PNNL-SA-170026. doi:10.5194/bg-19-3099-2022

2021

• Patel K.F., A.N. Myers-Pigg, B. Bond-Lamberty, S.J. Fansler, C. Norris, S.A. McKever, and J. Zheng, et al. 2021. "Soil carbon dynamics during drying vs. rewetting: Importance of antecedent moisture conditions." Soil Biology and Biochemistry 156. PNNL-SA-156504. doi:10.1016/j.soilbio.2021.108165
• Patel K.F., S.J. Fansler, T.P. Campbell, B. Bond-Lamberty, P. Smith, T. Roy Chowdhury, and L. McCue, et al. 2021. "Soil texture and environmental conditions influence the biogeochemical responses of soils to drought and flooding." Communications Earth & Environment 2. PNNL-SA-156503. doi:10.1038/s43247-021-00198-4
• Peterson M.J., P. Handakumbura, A.M. Thompson, Z.R. Russell, Y. Kim, S.J. Fansler, and M.L. Smith, et al. 2021. "Deciphering the microbial and molecular responses of geographically diverse Setaria accessions grown in a nutrient-poor soil." PLoS One 16, no. 12:Art. No. e0259937. PNNL-SA-169097. doi:10.1371/journal.pone.0259937
• Plymale A.E., J.R. Wells, C.I. Pearce, C.J. Brislawn, E.B. Graham, T. Cheeke, and J.L. Allen, et al. 2021. "Niche partitioning of microbial communities at an ancient vitrified hillfort: implications for vitrified radioactive waste disposal." Geomicrobiology Journal 38, no. 1:36-56. PNNL-SA-150253. doi:10.1080/01490451.2020.1807658
• Sengupta A., S.J. Fansler, R.K. Chu, R.E. Danczak, V.A. Garayburu-Caruso, L. Renteria, and H. Song, et al. 2021. "Disturbance triggers non-linear microbe-environment feedbacks." Biogeosciences 18, no. 16:4773-4789. PNNL-SA-157144. doi:10.5194/bg-18-4773-2021
• Wright A.T., S.J. Fansler, A.K. Steiger, A.M. Thompson, and J.P. Bardhan. 2021. PhenoProfiling: Mapping phenotypic outcomes to molecular determinants of biochemical activity. PNNL-32115. Richland, WA: Pacific Northwest National Laboratory. PhenoProfiling: Mapping phenotypic outcomes to molecular determinants of biochemical activity
• Wu R., M.R. Davison, W.C. Nelson, E.B. Graham, S.J. Fansler, Y. Farris, and S.L. Bell, et al. 2021. "DNA viral diversity, abundance and functional potential vary across grassland soils with a range of historical moisture regimes." mBio 12, no. 6:e02595-21. PNNL-SA-166275. doi:10.1128/mBio.02595-21

2020

• Bhattacharjee A., A.M. Thompson, K.C. Schwarz, M.C. Burnet, Y. Kim, J. Nunez, and S.J. Fansler, et al. 2020. "Soil microbial EPS resiliency is influenced by carbon source accessibility." Soil Biology and Biochemistry 151. PNNL-SA-153321. doi:10.1016/j.soilbio.2020.108037
• Danczak R.E., R.K. Chu, S.J. Fansler, A.E. Goldman, E.B. Graham, M.M. Tfaily, and J.G. Toyoda, et al. 2020. "Using metacommunity ecology to understand environmental metabolomes." Nature Communications 11, no. 1:Article No. 6369. PNNL-SA-152827. doi:10.1038/s41467-020-19989-y
• Garayburu-Caruso V.A., R.E. Danczak, J.C. Stegen, L. Renteria, M.L. McCall, A.E. Goldman, and R.K. Chu, et al. 2020. "Using Community Science to Reveal the Global Chemogeography of River Metabolomes." Metabolites 10, no. 12:518. PNNL-SA-157277. doi:10.3390/metabo10120518
• Khan N., E. Yeung, Y. Farris, S.J. Fansler, and H. Bernstein. 2020. "A broad-host-range event detector: expanding and quantifying between Escherichia coli and Pseudomonas species." Synthetic Biology 5, no. 1:Article No: ysaa002. PNNL-SA-148063. doi:10.1093/synbio/ysaa002
• Mao J., Y. Kim, Y. Zhou, D. Hu, C. Zhong, H. Chang, and C.J. Brislawn, et al. 2020. "Genetic and Metabolic Links Between the Murine Microbiome and Memory." Microbiome 8, no. 1:Article No. 53. PNNL-SA-143770. doi:10.1186/s40168-020-00817-w
• McClure R.S., D.T. Naylor, Y. Farris, M.R. Davison, S.J. Fansler, K.S. Hofmockel, and J.K. Jansson. 2020. "Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome." Frontiers in Microbiology 11. PNNL-SA-153634. doi:10.3389/fmicb.2020.01987
• Naylor D.T., S.J. Fansler, C.J. Brislawn, W.C. Nelson, K.S. Hofmockel, J.K. Jansson, and R.S. McClure. 2020. "Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules." mBio 11, no. 4:e01349-20. PNNL-SA-153705. doi:10.1128/mBio.01349-20
• Nelson W.C., E.B. Graham, A.R. Crump, S.J. Fansler, E.V. Arntzen, D.W. Kennedy, and J.C. Stegen. 2020. "Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome." PLoS One 15, no. 1:Article No. e0228165. PNNL-SA-125632. doi:10.1371/journal.pone.0228165
• Nelson W.C., L.N. Anderson, R. Wu, J.E. McDermott, S.L. Bell, A. Jumpponen, and S.J. Fansler, et al. 2020. "Terabase Metagenome Sequencing of Grassland Soil Microbiomes." Microbiology Resource Announcements 9, no. 32:Article No. e00718-20. PNNL-SA-153752. doi:10.1128/MRA.00718-20
• Steiger A.K., S.J. Fansler, C. Whidbey, C.J. Miller, and A.T. Wright. 2020. "Probe-Enabled Approaches for Function-Dependent Cell Sorting and Characterization of Microbiome Subpopulations." In Chemical Tools for Imaging, Manipulating, and Tracking Biological Systems: Diverse Methods for Prokaryotic and Eukaryotic Systems: Methods in Enzymology, edited by D.M. Chenoweth. 89-107. San Diego, California:Academic Press. PNNL-SA-150390. doi:10.1016/bs.mie.2020.03.014

2019

• Boiteau R.M., S.J. Fansler, Y. Farris, J.B. Shaw, D.W. Koppenaal, L. Pasa Tolic, and J.K. Jansson. 2019. "Siderophore Profiling of Co-Habitating Soil Bacteria by Ultra-High Resolution Mass Spectrometry." Metallomics 11, no. 1:166-175. PNNL-SA-139283. doi:10.1039/c8mt00252e
• Brislawn C.J., E.B. Graham, K.L. Dana, P.D. Ilhardt, S.J. Fansler, W.B. Chrisler, and J.B. Cliff, et al. 2019. "Forfeiting the priority effect: turnover defines biofilm community succession." The ISME Journal 13, no. 7:1865-1877. PNNL-SA-133067. doi:10.1038/s41396-019-0396-x
• Kim Y., A.M. Snijders, C.J. Brislawn, K.G. Stratton, E.M. Zink, S.J. Fansler, and T.O. Metz, et al. 2019. "Light-stress influences the composition of the murine gut microbiome, memory function, and plasma metabolome." Frontiers in Molecular Biosciences 6. PNNL-SA-144001. doi:10.3389/fmolb.2019.00108
• Vera-Gargallo B., T. Roy Chowdhury, J.M. Brown, S.J. Fansler, A. Duran-Viseras, C. Sanchez-Porro, and V.L. Bailey, et al. 2019. "Spatial Distribution of Prokaryotic Communities in Hypersaline Soils." Scientific Reports 9. PNNL-SA-136048. doi:10.1038/s41598-018-38339-z
• Whidbey C., N.C. Sadler, R.N. Nair, R.F. Volk, A.J. DeLeon, L.M. Bramer, and S.J. Fansler, et al. 2019. "A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome." Journal of the American Chemical Society 141, no. 1:42-47. PNNL-SA-127532. doi:10.1021/jacs.8b09668
• Zegeye E. 2019. "Selection, Succession, and Stabilization of Soil Microbial Consortia." mSystems 4, no. 4:Article Number e00055-19. PNNL-SA-146173. doi:10.1128/mSystems.00055-19
• Zegeye E., C.J. Brislawn, Y. Farris, S.J. Fansler, K.S. Hofmockel, J.K. Jansson, and A.T. Wright, et al. 2019. "Selection, succession and stabilization of soil microbial consortia." mSystems 4, no. 4:e00055-19. PNNL-SA-138630. doi:10.1128/mSystems.00055-19
• Zegeye E., C.J. Brislawn, Y. Farris, S.J. Fansler, K.S. Hofmockel, J.K. Jansson, and A.T. Wright, et al. 2019. "Selection, Succession, and Stabilization of Soil Microbial Consortia." mSystems 4, no. 4:Article Number e00055-19. PNNL-SA-146173. doi:10.1128/mSystems.00055-19

2018

• Bottos E.M., D.W. Kennedy, E.B. Romero, S.J. Fansler, J.M. Brown, L.M. Bramer, and R.K. Chu, et al. 2018. "Dispersal Limitation and Thermodynamic Constraints Govern Spatial Structure of Permafrost Microbial Communities." FEMS Microbiology Ecology 94, no. 8:fiy110. PNNL-SA-130968. doi:10.1093/femsec/fiy110
• Graham E.B., A.R. Crump, D.W. Kennedy, E.V. Arntzen, S.J. Fansler, S.O. Purvine, and C.D. Nicora, et al. 2018. "Multi ‘omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone." Science of the Total Environment 642. PNNL-SA-133671. doi:10.1016/j.scitotenv.2018.05.256

2017

• Bailey V.L., A.P. Smith, M.M. Tfaily, S.J. Fansler, and B. Bond-Lamberty. 2017. "Differences in Soluble Organic Carbon Chemistry in Pore Waters Sampled from Different Pore Size Domains." Soil Biology and Biochemistry 107. PNNL-SA-118268. doi:10.1016/j.soilbio.2016.11.025
• Bernstein H.C., C.J. Brislawn, K.L. Dana, T.M. Flores-Wentz, A.B. Cory, S.J. Fansler, and J.K. Fredrickson, et al. 2017. "Primary and heterotrophic productivity relate to multikingdom diversity in a hypersaline mat." FEMS Microbiology Ecology 93, no. 10:Article No. fix121. PNNL-SA-127139. doi:10.1093/femsec/fix121
• Graham E.B., A.R. Crump, C.T. Resch, S.J. Fansler, E.V. Arntzen, D.W. Kennedy, and J.K. Fredrickson, et al. 2017. "Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes." Environmental Microbiology 19. PNNL-SA-122625. doi:10.1111/1462-2920.13720
• Graham E.B., J.C. Stegen, A.R. Crump, C.T. Resch, S.J. Fansler, E.V. Arntzen, and D.W. Kennedy, et al. 2017. "Organic carbon thermodynamics elucidate spatiotemporal mechanisms governing hyporheic zone biogeochemical cycling." In Proceedings of the Subsurface Biogeochemical Research and Terrestrial Ecosystem Science Joint Meeting April 25-26, 2017, Potomac, Maryland. Washington, District Of Columbia:US Department of Energy, Office of Biological and Environmental Research. PNNL-SA-125130.
• Snijders A.M., S.A. Langley, Y. Kim, C.J. Brislawn, C. Noecker, E.M. Zink, and S.J. Fansler, et al. 2017. "Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome." Nature Microbiology 2, no. 2:Article No. 16221. PNNL-SA-118063. doi:10.1038/nmicrobiol.2016.221

2016

• Bond-Lamberty B., H. Bolton, S.J. Fansler, A. Heredia-Langner, C. Liu, L.A. McCue, and J.L. Smith, et al. 2016. "Soil respiration and bacterial structure and function after 17 years of a reciprocal soil transplant experiment." PLoS One 11, no. 3:e0150599. PNNL-SA-94916. doi:10.1371/journal.pone.0150599
• Graham E.B., A.R. Crump, C.T. Resch, S.J. Fansler, E.V. Arntzen, D.W. Kennedy, and J.K. Fredrickson, et al. 2016. "Coupling spatiotemporal community assembly processes to ecosystem function." Frontiers in Microbiology 7. PNNL-SA-118464. doi:10.3389/fmicb.2016.01949
• Stegen J.C., A.H. Hurlbert, B. Bond-Lamberty, X. Chen, C.G. Anderson, R.K. Chu, and F. Dini-Andreote, et al. 2016. "Aligning the Measurement of Microbial Diversity with Macroecological Theory." Frontiers in Microbiology 7. PNNL-SA-122085. doi:10.3389/fmicb.2016.01487
• Stegen J.C., J.K. Fredrickson, M.J. Wilkins, A. Konopka, W.C. Nelson, E.V. Arntzen, and W.B. Chrisler, et al. 2016. "Groundwater-Surface Water Mixing Shifts Ecological Assembly Processes and Stimulates Organic Carbon Turnover." Nature Communications 7. PNNL-SA-111962. doi:10.1038/ncomms11237
• White R.A., E.M. Bottos, T. Roy Chowdhury, J.D. Zucker, C.J. Brislawn, C.D. Nicora, and S.J. Fansler, et al. 2016. "Moleculo long-read sequencing facilitates assembly and resolves functionally active genomic bins from complex soil metagenomes." mSystems 1, no. 3. PNNL-SA-117268. doi:10.1128/mSystems.00045-16

2015

• Yan S., Y. Liu, C. Liu, L. Shi, J. Shang, H. Shan, and J.M. Zachara, et al. 2015. "Nitrate bioreduction in redox-variable low permeability sediments." Science of the Total Environment 539. PNNL-SA-105761. doi:10.1016/j.scitotenv.2015.08.122

2013

• Bailey V.L., L.A. McCue, S.J. Fansler, M.I. Boyanov, F. DeCarlo, K.M. Kemner, and A. Konopka. 2013. "Micrometer-Scale Physical Structure and Microbial Composition of Soil Macroaggregates." Soil Biology and Biochemistry 65. PNNL-SA-84756. doi:10.1016/j.soilbio.2013.02.005
• Bailey V.L., S.J. Fansler, J.C. Stegen, and L.A. McCue. 2013. "Linking Microbial Community Structure to ß-Glucosidic Function in Soil Aggregates." The ISME Journal 7, no. 10:2044-2053. PNNL-SA-90744. doi:10.1038/ismej.2013.87

2012

• Bailey V.L., C.L. Bilskis, S.J. Fansler, L.A. McCue, J.L. Smith, and A. Konopka. 2012. "Measurements of Microbial Community Activities in Individual Soil Macroaggregates." Soil Biology and Biochemistry 48. PNNL-SA-82792. doi:10.1016/j.soilbio.2012.01.004
• McLean J.S., S.J. Fansler, P.D. Majors, K. Mcateer, L.Z. Allen, M.E. Shirtliff, and R. Lux, et al. 2012. "Identifying Low pH Active and Lactate-Utilizing Taxa within Oral Microbiome Communities from Healthy Children Using Stable Isotope Probing Techniques." PLoS One 7, no. 3:Article No. e32219. PNNL-SA-83915. doi:10.1371/journal.pone.0032219
• Webb-Robertson B.M., V.L. Bailey, S.J. Fansler, M.J. Wilkins, and N.J. Hess. 2012. "Spectral Signatures for the Classification of Microbial Species using Raman Spectra." Analytical and Bioanalytical Chemistry 404, no. 2:563-572. PNNL-SA-84618. doi:10.1007/s00216-012-6152-y

2011

• Bailey V.L., S.J. Fansler, J.L. Smith, and H. Bolton. 2011. "Reconciling Apparent Variability in Effects of Biochar Amendment on Soil Enzyme Activities by Assay Optimization." Soil Biology and Biochemistry 43, no. 2:296-301. PNNL-SA-72584. doi:10.1016/j.soilbio.2010.10.014

2010

• Bailey V.L., S.J. Fansler, S. Bandyopadhyay, J.L. Smith, K.M. Waters, and H. Bolton. 2010. "Direct Detection of Soil mRNAs using Targeted Microarrays for Genes Associated with Lignin Degradation." Soil Biology and Biochemistry 42. PNNL-SA-63713.

2005

• Fansler S.J., J.L. Smith, H. Bolton, and V.L. Bailey. 2005. "Distribution of Two C Cycle Enzymes in Soil Aggregates of a Prairie Chronosequence." Biology and Fertility of Soils 42, no. 1:17-23. PNNL-SA-42239. doi:10.1007/s00374-005-0867-2