Staff information

PNNL Publications

2018

• Lee JY, GM Fujimoto, RE Wilson, HS Wiley, and SH Payne. 2018. "Blazing Signature Filter: a library for fast pairwise similarity comparisons." BMC Bioinformatics 19(1):Article No. 221.  doi:10.1186/s12859-018-2210-6

2017

• Kyle JE, KL Crowell, CP Casey, GM Fujimoto, S Kim, SE Dautel, RD Smith, SH Payne, and TO Metz. 2017. "LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data." Bioinformatics 33(11):1744-1746.  doi:10.1093/bioinformatics/btx046
• Park JK, PD Piehowski, CS Wilkins, M Zhou, JA Mendoza, GM Fujimoto, BC Gibbons, JB Shaw, Y Shen, AK Shukla, RJ Moore, T Liu, VA Petyuk, N Tolic, L Pasa Tolic, RD Smith, SH Payne, and S Kim. 2017. "Informed-Proteomics: Open Source Software Package for Top-down Proteomics." Nature Methods 14(9):909-914.  doi:10.1038/nmeth.4388

2016

• Degan MG, L Ryadinskiy, GM Fujimoto, CS Wilkins, CF Lichti, and SH Payne. 2016. "A Skyline Plugin for Pathway-Centric Data Browsing." Journal of the American Society for Mass Spectrometry 27(11):1752-1757.  doi:10.1007/s13361-016-1448-3

2015

• Payne SH, ME Monroe, CC Overall, GR Kiebel, MG Degan, BC Gibbons, GM Fujimoto, SO Purvine, JN Adkins, MS Lipton, and RD Smith. 2015. "The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity." Scientific Data 2:Art. No. 150041.  doi:10.1038/sdata.2015.41
• Xu Z, C Wu, F Xie, GW Slysz, N Tolic, ME Monroe, VA Petyuk, SH Payne, GM Fujimoto, RJ Moore, TL Fillmore, AA Schepmoes, D Levine, R Townsend, S Davies, S Li, M Ellis, E Boja, R Rivers, H Rodriguez, KD Rodland, T Liu, and RD Smith. 2015. "Comprehensive Quantitative Analysis of Ovarian and Breast Cancer Tumor Peptidomes." Journal of Proteome Research 14(1):422-433.  doi:10.1021/pr500840w
• Xu Z, C Wu, F Xie, GW Slysz, N Tolic, ME Monroe, VA Petyuk, SH Payne, GM Fujimoto, RJ Moore, TL Fillmore, AA Schepmoes, D Levine, R Townsend, S Davies, S Li, M Ellis, E Boja, R Rivers, H Rodriguez, KD Rodland, T Liu, and RD Smith. 2015. "Comprehensive Quantitative Analysis of Ovarian and Breast Cancer Tumor Peptidomes." Journal of Proteome Research 14(1):422-433.  doi:10.1021/pr500840w

2014

• Fujimoto GM, ME Monroe, LM Rodriguez, C Wu, B MacLean, RD Smith, M MacCoss, and SH Payne. 2014. "Accounting for population variation in targeted proteomics." Journal of Proteome Research 13(1):321-323.  doi:10.1021/pr4011052