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Fundamental and Computational Sciences Directorate

Staff information

Eric Stephan

Data Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: K7-90
Richland, WA 99352

PNNL Publications

2017

  • Schram M., V. Bansal, R.D. Friese, N.R. Tallent, J. Yin, K.J. Barker, and E.G. Stephan, et al. 2017. "Integrating prediction, provenance, and optimization into high energy workflows." Journal of Physics: Conference Series 898, no. 6:Article No. 062052. PNNL-SA-129007. doi:10.1088/1742-6596/898/6/062052
  • Stephan E.G., B. Raju, T.O. Elsethagen, L.C. Pouchard, and C. Gamboa. 2017. "A Scientific Data Provenance Harvester for Distributed Applications." In New York Scientific Data Summit (NYSDS 2017), August 6-9, 2017, New York. Piscataway, New Jersey:IEEE. PNNL-SA-128607. doi:10.1109/NYSDS.2017.8085041

2016

  • Elsethagen T.O., E.G. Stephan, B. Raju, M. Schram, M.C. Macduff, D.J. Kerbyson, and K. Kleese-Van Dam, et al. 2016. "Data Provenance Hybridization Supporting Extreme-Scale Scientific WorkflowApplications." In New York Scientific Data Summit (NYSDS 2016), August 14-17, 2016, New York. Piscataway, New Jersey:IEEE. PNNL-SA-119959. doi:10.1109/NYSDS.2016.7747819
  • Purohit S., W.P. Smith, A.R. Chappell, P. West, B. Lee, E.G. Stephan, and P. Fox. 2016. "Effective Tooling for Linked Data Publishing in Scientific Research." In 10th IEEE International Conference on Semantic Computing (ICSC 2016), February 4-6, 2016, Laguna Hills, California, 24-31. Piscataway, New Jersey:IEEE. PNNL-SA-113974. doi:10.1109/ICSC.2016.87
  • Raju B., T.O. Elsethagen, E.G. Stephan, and K. Kleese van Dam. 2016. "A Scientific Data Provenance API for Distributed Applications." In International Conference on Collaboration Technologies and Systems (CTS 2016), October 31-November 4, 2016, Orlando, Florida, 104-111. Piscataway, New Jersey:IEEE. PNNL-SA-119915. doi:10.1109/CTS.2016.0036
  • Stephan E.G., T.O. Elsethagen, L.K. Berg, M.C. Macduff, P.R. Paulson, W.J. Shaw, and C. Sivaraman, et al. 2016. "Semantic Catalog of Things, Services, and Data to Support a Wind Data Management Facility." Information Systems Frontiers 18, no. 4:679-691. PNNL-SA-100267. doi:10.1007/s10796-015-9546-5
  • Thomas M., J. Laskin, B. Raju, E.G. Stephan, T.O. Elsethagen, N. Van, and S.N. Nguyen. 2016. "Enabling Re-executable Workflows with Near-realtime Visualization, Provenance Capture and Advanced Querying for Mass Spectrometry Data." In New York Scientific Data Summit (NYSDS 2016), August 14-17, 2016, New York. Piscataway, New Jersey:IEEE. PNNL-SA-119824. doi:10.1109/NYSDS.2016.7747806

2015

  • Hardin D., E.G. Stephan, W. Wang, C.D. Corbin, and S.E. Widergren. 2015. Buildings Interoperability Landscape. PNNL-25124. Richland, WA: Pacific Northwest National Laboratory.
  • Kleese van Dam K., E.G. Stephan, B. Raju, I. Altintas, T.O. Elsethagen, and S. Krishnamoorthy. 2015. "Enabling Structured Exploration of Workflow Performance Variability in Extreme-Scale Environments." In 8th Workshop on Many-Task Computing on Clouds, Grids, and Supercomputers (MTAGS) 2015, November 15, 2015, Austin, Texas. Chicago, Illinois:Data-Intensive Distributed Systems Laboratory. PNNL-SA-120941.
  • Stephan E.G., R.A. Pawlowski, S. Sridhar, and M.J. Rice. 2015. Federating Cyber and Physical Models for Event-Driven Situational Awareness. PNNL-24871. Richland, WA: Pacific Northwest National Laboratory.

2014

  • Johnson T.J., B.E. Bernacki, R.L. Redding, Y. Su, C.S. Brauer, T.L. Myers, and E.G. Stephan. 2014. "Intensity-Value Corrections for Integrating Sphere Measurements of Solid Samples Measured behind Glass." Applied Spectroscopy 68, no. 11:1224-1234. PNNL-SA-98862. doi:10.1366/13-07322
  • Kleese van Dam K., C.S. Lansing, T.O. Elsethagen, J.E. Hathaway, Z.C. Guillen, J.A. Dirks, and D.C. Skorski, et al. 2014. "Nationwide Buildings Energy Research enabled through an integrated Data Intensive Scientific Workflow and Advanced Analysis Environment." Building Simulation 7, no. 4:335-343. PNNL-SA-95829. doi:10.1007/s12273-014-0171-x
  • Sivaraman C., E.G. Stephan, M.C. Macduff, and C.D. Hagler. 2014. Data Archive and Portal Thrust Area Strategy Report. PNNL-23718. Richland, WA: Pacific Northwest National Laboratory.

2013

  • Joslyn C.A., E.A. Hogan, P.R. Paulson, E.S. Peterson, E.G. Stephan, and D.G. Thomas. 2013. "Order Theoretical Semantic Recommendation." In Proceedings of the 2nd International Workshop on Ordering and Reasoning (OrdRing 2013), October 22, 2013, Sydney, Australia, edited by I Celino, et al, 1059, 9-20. Karlsruhe:Semantic Web Science Association. PNNL-SA-97159.
  • Stephan E.G., P. Pinheiro da Silva, and K. Kleese van Dam. 2013. "Bridging the Gap between Scientific Data Producers and Consumers: A Provenance Approach." In Data Intensive Science, edited by T Critchlow and K Kleese van Dam. 279-300. Boca Raton, Florida:CRC Press. PNNL-SA-88577.
  • Stephan E.G., T.O. Elsethagen, A.S. Wynne, C. Sivaraman, M.C. Macduff, L.K. Berg, and W.J. Shaw. 2013. "A Linked Fusion of Things, Services, and Data to Support a Collaborative Data Management Facility." In 9th International Conference on Collaborative Computing: Networking, Applications and Worksharing (Collaboratecom 2013), October 20-23, 2013, Austin, Texas, 579-584. Austin, :ICST, the Institute for Computer science, Social Informatics and Telecommunications Engineering. PNNL-SA-98507. doi:10.4108/icst.collaboratecom.2013.254158
  • Stephan E.G., T.O. Elsethagen, K. Kleese van Dam, and L.D. Riihimaki. 2013. "What Comes First, the OWL or the Bean? Creating Reusable Scientific Software with OWL/RDF Vocabularies." In First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1), November 17, 2013, Denver, Colorado. Manchester:WSSSPE. PNNL-SA-98167.

2012

  • Johnson T.J., Y. Su, K.H. Jarman, B.M. Kunkel, J.C. Birnbaum, A.G. Joly, and E.G. Stephan, et al. 2012. "Demonstrated Wavelength Portability of Raman Reference Data for Explosives and Chemical Detection." International Journal of Spectroscopy 2012. PNNL-SA-85885. doi:10.1155/2012/297056

2011

  • Kunkel B.M., Y. Su, R.G. Tonkyn, E.G. Stephan, A.G. Joly, J.C. Birnbaum, and K.H. Jarman, et al. 2011. "Raman Database Considerations for Near-Infrared Systems." In Optics and Photonics for Counterterrorism and Crime Fighting VIII, September 19, 2011, Prague, Czech Republic. Proceedings of the SPIE, edited by R Zamboni, et al, 8189, Article No. 818905. Bellingham, Washington:SPIE. PNNL-SA-82532. doi:10.1117/12.898368
  • Moreau L., B. Clifford, J. Freire, J. Futrelle, Y. Gil, P. Groth, and N. Kwasnikowska, et al. 2011. "The Open Provenance Model Core Speci?cation (v1.1)." Future Generations Computer Systems 27, no. 6:743-756. PNNL-SA-70711. doi:10.1016/j.future.2010.07.005

2010

  • Stephan E.G., T.D. Halter, and B.D. Ermold. 2010. "Leveraging The Open Provenance Model as a Multi-Tier Model for Global Climate Research." In In Provenance and Annotation of Data and Processes - Third International Provenance and Annotation Workshop, IPAW 2010, June 15-16, 2010, Troy, New York. Lecture Notes in Computer Science, edited by DL McGuinness, et al, 6378, 34-41. Berlin:Springer. PNNL-SA-71579. doi:10.1007/978-3-642-17819-1
  • Stephan E.G., T.D. Halter, T.J. Critchlow, P. Pinheiro Da Silva, and L. Salayandia. 2010. "Using Domain Requirements to Achieve Science-Oriented Provenance." In Provenance and Annotation of Data and Processes - Third International Provenance and Annotation Workshop, IPAW 2010: Lecture Notes in Computer Science, edited by DL McGuinness, JR Michaelis and L Moreau, 6378, 301-303. New York:Springer. PNNL-SA-73218. doi:10.1007/978-3-642-17819-1_40

2009

  • Gibson T.D., K.L. Schuchardt, and E.G. Stephan. 2009. "Application of Named Graphs Towards Custom Provenance Views." In 1st Workshop on the Theory and Practice of Provenance (TaPP '09), Paper No. 5. Berkeley, California:USENIX. PNNL-SA-64621.
  • Stephan E.G., J.S. Burke, C.A. Carlson, D.S. Gillen, C.A. Joslyn, B.K. Olsen, and T.J. Critchlow. 2009. "GeoSpatial Data Analysis for DHS Programs." In 2009 IEEE Conference on Technologies for Homeland Security, HST 2009, 553-560. Piscataway, New Jersey:I E E E. PNNL-SA-65534.
  • Stephan E.G., T.D. Halter, T.D. Gibson, N. Beagley, and K.L. Schuchardt. 2009. "A Multi-Tier Provenance Model for Global Climate Research." In International Conference on Network-Based Information Systems (NBIS '09), August 19-21, 2009, Indianapolis, Indiana, 481-486. Piscataway, New Jersey:IEEE. PNNL-SA-66186. doi:10.1109/NBiS.2009.16
  • Wynne A.S., I. Gorton, J.M. Chase, and E.G. Stephan. 2009. MeDICi: An Open Platform for Sensor Integration. PNNL-18716. Richland, WA: Pacific Northwest National Laboratory.

2008

  • Moreau L., B.T. Ludaescher, I. Altintas, R.S. Barga, S. Bowers, S.P. Callahan, and G. Chin, et al. 2008. "Special Issue: The First Provenance Challenge." Concurrency and Computation. Practice & Experience 20, no. 5:409-418. PNNL-SA-58957. doi:10.1002/cpe.v20:5
  • Paulson P.R., T.D. Gibson, K.L. Schuchardt, and E.G. Stephan. 2008. Provenance Store Evaluation. PNNL-17237. Richland, WA: Pacific Northwest National Laboratory.
  • Peterson E.S., E.G. Stephan, A.L. Corrigan, R.D. Lins, T.A. Soares, R.E. Scarberry, and S.J. Rose, et al. 2008. "Northwest Trajectory Analysis Capability: A Platform for Enhancing Computational Biophysics Analysis." In Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008, 558-562. Bogart, Georgia:CSREA Press. PNNL-SA-70758.
  • Schuchardt K.L., T.D. Gibson, E.G. Stephan, and G. Chin. 2008. "Applying Content Management to Automated Provenance Capture." Concurrency and Computation. Practice & Experience 20, no. 5:541-554. PNNL-SA-52935.

2007

  • Shah A.R., M. Singhal, K.R. Klicker, E.G. Stephan, H.S. Wiley, and K.M. Waters. 2007. "Enabling high-throughput data management systems biology: The Bioinformatics Resource Manager." Bioinformatics 23, no. 7:906-909. PNNL-SA-49327. doi:10.1093/bioinformatics/btm031

2006

  • Chin G., E.G. Stephan, D.K. Gracio, O.A. Kuchar, P.D. Whitney, and K.L. Schuchardt. 2006. "Developing Concept-Based User Interfaces for Scientific Computing." Computer 39, no. 9:26-34. PNNL-SA-48064.
  • Talbott T.D., K.L. Schuchardt, E.G. Stephan, and J.D. Myers. 2006. "Mapping Physical Formats to Logical Models to Extract Data and Metadata: The Defuddle Parsing Engine." In IPAW'06 International Provenance and Annotation Workshop, Chicago, Illinois, May 3-5 2006. Lecture Notes in Computer Science, edited by Luc Moreau and Ian Foster, 4145, 73-81. Berlin:Springer-Verlag. PNNL-SA-48498.
  • Waters K.M., M. Singhal, B.M. Webb-Robertson, E.G. Stephan, and J.M. Gephart. 2006. "Breaking the High-Throughput Bottleneck: New tools help biologists integrate complex datasets." Scientific Computing 23, no. 4:22-26. PNNL-SA-48217.

2005

  • Chin G., E.G. Stephan, D.K. Gracio, O.A. Kuchar, P.D. Whitney, and K.L. Schuchardt. 2005. "Scientist-Centered Graph-Based Models of Scientific Knowledge." In HCI International 2005. 11th International Conference on Human-Computer Interaction, 22-27, July 2005, Caesars Palace, Las Vegas, Nevada USA., 10 pages. Mahwah, New Jersey:Lawrence Erlbaum and Associates. PNNL-SA-43320.
  • Myers J.D., T.C. Allison, S.J. Bittner, B.T. Didier, M. Frenklach, W.H. Green, and Y. Ho, et al. 2005. "A Collaborative Informatics Infrastructure for Multi-scale Science." Cluster Computing 8, no. 4:243-253. PNNL-SA-48067.
  • Singhal M., K.R. Klicker, G. Chin, L.L. Trease, E.G. Stephan, and D.K. Gracio. 2005. "Bioinformatics Approach for Exploring MS/MS Proteomics Data." In Proceedings of the 38th Annual Hawaii International Conference on System Science HICSS '05 held on the Big Island, January 2004, edited by R. H. Sprague. Los Alamitos, California:IEEE Computer Society Press. PNNL-SA-41531. doi:10.1109/HICSS.2005.119

2004

  • Chin G., E.G. Stephan, and D.K. Gracio. 2004. "Computing through Scientific Abstractions in SysBioPS." In Proceedings of the 2004 IEEE International Conference on Systems, Man and Cybernetics, 1, 70-75. New York, New York:IEEE. PNNL-SA-42055.
  • Chin G., E.G. Stephan, K.R. Klicker, A.L. Corrigan, and H.J. Sofia. 2004. "Supporting Computational Visual Theories in Biology." In The 2004 IEEE Symposium on Visual Languages and Human-Centric Computing, 69-71. Piscataway, New Jersey:IEEE. PNNL-SA-42035.
  • Havre S.L., M. Singhal, B. Gopalan, D.A. Payne, K.R. Klicker, G.R. Kiebel, and K.J. Auberry, et al. 2004. "Integrating Evolving Tools for Proteomics Research." In Proceedings of The 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, edited by Valafar, Faramarz and Homayoun Valafar, 2004, 307-313. Las Vegas, Nevada:CSREA Press. PNNL-SA-40933.
  • Klicker K.R., M. Singhal, E.G. Stephan, L.L. Trease, and D.K. Gracio. 2004. "Computational Cell Environment: A Problem Solving Environment for integrating diverse biological data." In Proceedings of the 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, edited by Valafar, Faramarz and Homayoun Valafar, 422-428. Las Vegas, Nevada:CSREA Press. PNNL-SA-41532.
  • Myers J.D., T.C. Allison, S. Bittner, B.T. Didier, M. Frenklach, W.H. Green, and Y. Ho, et al. 2004. "A Collaborative Informatics Infrastructure for Multi-scale Science." In Proceedings of the Second International Workshop on Challenges of Large Applications in Distributed Environments. CLADE 2004, Honolulu Hawaii, 24-33. Piscataway, New Jersey:Institute of Electrical and Electronics Engineers, Inc. PNNL-SA-40934.
  • Singhal M., E.G. Stephan, K.R. Klicker, L.L. Trease, G. Chin, D.K. Gracio, and D.A. Payne. 2004. "Enabling Systems Biology: A Scientific Problem-Solving Environment." In International Conference on Computational Science, June 6-9, 2004, Krakow, Poland, 540-547. Berlin:Springer-Verlag. PNNL-SA-41348.
  • Stephan E.G., G. Chin, A.L. Corrigan, K.R. Klicker, and H.J. Sofia. 2004. "Synchronized Biological Knowledge and Data Management: A Hybrid Approach." In Proceedings of the 2004 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, edited by Valafar, Faramarz and Homayoun Valafar, 105-110. Las Vegas, Nevada:CSREA Press. PNNL-SA-40981.

2003

  • Pancerella C.M., J. Hewson, W.S. Koegler, D. Leahy, M. Lee, L. Rahn, and C. Yang, et al. 2003. "Metadata in the Collaboratory for Multi-Scale Chemical Science." In DC-2003: Proceedings of the 2003 International Conference on Dublin Core and Metadata Applications: Supporting Communities of Discourse and Practice - Metadata Research & Applications, Article No. 13. Dublin, Ohio:Dublin Core Metadata Initiative (DCMI). PNNL-SA-39194.

2002

  • Schuchardt K.L., J.D. Myers, and E.G. Stephan. 2002. "A Web-Based Data Architecture for Problem-Solving Environments: Application of Distributed Authoring and Versioning to the Extensible Computational Chemistry Environment." Cluster Computing 5, no. 3:287-296. PNNL-SA-35542.

2001

  • Schuchardt K.L., J.D. Myers, and E.G. Stephan. 2001. "Open Data Management Solutions for Problem Solving Environments: Application of Distributed Authoring and Versioning to the Extensible Computational Chemistry Environment." In Proceedings of the 10th IEEE International Symposium on High Performance Distributed Computing, edited by IEEE Computer Society, 228-238. Piscataway, New Jersey:IEEE Computer Society Press. PNNL-SA-34890.

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