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SEPTEMBER 17, 2020
Web Feature

Not Your Average Refinery

In a new review, PNNL researchers outline how to convert stranded biomass to sustainable fuel using electrochemical reduction reactions in mini-refineries powered by renewable energy.

Study Shows Coastal Wetlands Aid in Carbon Sequestration

data collection in marsh

PNNL scientist, Amy Borde collects data in a marsh on the Columbia River estuary.

Photo: Heida Diefenderfer

Sea-level rise impacts will likely decrease ecosystem carbon stocks

August 13, 2020
August 13, 2020
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Tidal marshes, seagrass beds, and tidal forests are exceptional at absorbing and storing carbon. They are referred to as total ecosystem carbon stocks, yet little data exists quantifying how much carbon is absorbed and stored by tidal wetlands in the Pacific Northwest (PNW). Knowing this information is valuable, particularly in the context of sea level rise and with the associated need for Earth system modeling to predict changes at the coast.

The Science

Researchers found that the average total ecosystem carbon stock in the PNW is higher than in other areas of the U.S. and other parts of the world. Marsh carbon stocks, in particular, are twice the global average. Researchers found progressive increases in total ecosystem carbon stocks along the elevation gradient of coastal wetland types common in the PNW: seagrass, low marshes, high marshes, and tidal forests. Total carbon also increased along the salinity gradient, with more carbon occurring in lower salinity areas.

Additionally, this research showed that common methods used to estimate soil carbon actually underestimate soil carbon stocks in coastal wetlands. Soil carbon storage below the depth of 100 centimeters proved to be an important carbon pool in PNW tidal wetlands.

The Impact

The results suggest that long-term sea-level rise impacts, such as tidal inundation and increased soil salinity, will likely decrease ecosystem carbon stocks. This is a concern if wetlands can’t migrate with increased sea level due to being bound by topography and human development.  

Summary

This research arose from the Pacific Northwest Blue Carbon Working Group, of which Amy Borde and Heida Diefenderfer of Pacific Northwest National Laboratory’s Coastal Sciences Division are members. The team studied 28 tidal ecosystems across the PNW coast, from Humboldt Bay, California, to Padilla Bay, Washington. They sampled common coastal wetland types that occur along broad gradients of elevation, salinity, and tidal influences, collecting the data necessary to calculate total carbon stocks in both above ground biomass and the soil profile.

In three years of study, the researchers found that most carbon is in the wetland soils not aboveground, and much of it is deeper than one meter—a typical lower limit of sampling. Total ecosystem carbon stocks progressively increased along the terrestrial-aquatic gradient of coastal wetland ecosystems common in the temperate zone including seagrass, low marshes, high marshes, and tidal forests. The findings were reported in “Total Ecosystem Carbon Stocks at the Marine-Terrestrial Interface: Blue Carbon of the Pacific Northwest Coast, USA,” published in the August 2020 online edition of Global Change Biology (DOI: 10.1111/gcb.15248).

Research Team: PNNL’s Amy Borde and Heida Diefenderfer, along with J. Boone Kauffman, Leila Giovanonni, James Kelly, Nicholas Dunstan, and Christopher Janousek (Oregon State University); Craig Cornu and Laura Brophy (Institute for Applied Ecology/Estuary Technical Group); and Jude Apple (Padilla Bay National Estuarine Research Reserve).

Funding

The grant award was administered by the Institute of Applied Ecology, and other partners included Oregon State University and the Padilla Bay National Estuarine Research Reserve. This research was supported by the National Oceanic and Atmospheric Administration, through a cooperative agreement with the University of Michigan. 

10.1111/gcb.15248

Kauffman, J Boone, Leila Giovanonni, James Kelly, Nicholas Dunstan, Amy Borde, Heida Diefenderfer, Craig Cornu, Christopher Janousek, Jude Apple, and Laura Brophy. “Total Ecosystem Carbon Stocks at the Marine‐terrestrial Interface: Blue Carbon of the Pacific Northwest Coast, United States.” Global change biology, no. 0 (August 11, 2020). DOI: 10.1111/GCB.15248

August 11, 2020
JULY 14, 2020
Web Feature

Turning the Tides

Their consistency and predictability makes tidal energy attractive, not only as a source of electricity but, potentially, as a mechanism to provide reliability and resilience to regional or local power grids.

Digging into the Details of Phosphorus Availability

Photo of plant with roots under ground

Courtesy of Shutterstock

New root blotting technique visualizes relationship between root growth, microbial activity, and soil nutrients.

July 7, 2020
July 7, 2020
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The Science

Phosphorous is an important nutrient for plants. However, the mechanisms used by plants to extract phosphorus from soil and incorporate it into their biomass are not well understood. Now, researchers developed a new technique to visualize the activity and distribution of enzymes that mobilize phosphate around plant roots. Tracking the location of these enzymes can help researchers better understand the chemical dynamics between roots, microbes, and soil that influence how plants get nutrients. The approach could also be applied to other nutrient-cycling enzymes.

Diagram showing rhizosphere blotting nondestructive process
A new root blotting technique produces an imprint of plant roots growing in flat slabs. The paper imprints can then be probed with different fluorescent indicators to visualize both the distribution and activity of phosphate-mobilizing enzymes surrounding the roots.

The Impact

Phosphorus is an essential nutrient for plants and therefore, global demand for phosphorus fertilizers is expected to grow to accommodate the world’s growing population. However, most of these fertilizers are made from rock phosphorus, a non-renewable resource. This research provides new insights into the complex dynamics of phosphorous exchange between soil, microbes, and plant roots. Knowledge from this newly developed approach will help scientists identify strategies to improve phosphorus use efficiency for bioenergy crop production in marginal environments, as well as for agriculture in general.

Summary

Soil bacteria, fungi, and plants produce enzymes called phosphatases, which convert organic sources of phosphorus into a form that plants can absorb. Researchers have studied the microbial activity in bulk soil samples, providing information about the overall functional potential of the environment. But to better understand the dynamics between soil, plants, and microbes, more detail is needed. To accomplish that, a team of researchers developed a new technique based on root blotting to reveal phosphatase activity and distribution around plant roots. They grew switchgrass in flat pots or “rhizoboxes” containing soil with pellets of root matter as sources of organic phosphorus. Then, they applied a nitrocellulose membrane to capture proteins around the roots. Finally, the researchers stained the membrane with fluorescent indicators for phosphatase activity and protein concentration. This revealed the spatial distribution of phosphatase around the roots of plants, and highlighted regions of increased phosphatase activity.

This approach could be used to study phosphatase activity over time, as well as other nutrient-cycling enzymes. The combination of membrane extraction, with rapid analysis via fluorescent probes to reveal localization of phosphatase activity in the rhizosphere, offers a new technique for environmental applications. Expanding this approach could enable simultaneous visualization of multiple enzyme types in soil systems.

Funding

Development of this method was funded by DOE’s Office of Science, Biological and Environmental Research Program by the Early Career Research Award program (PI: Jim Moran).

10.1016/j.soilbio.2020.107820

V.S. Lin, et al. “Non-destructive spatial analysis of phosphatase activity and total protein distribution in the rhizosphere using a root blotting method.” Soil Biology and Biochemistry, 146 (2020). DOI: 10.1016/j.soilbio.2020.107820

JUNE 30, 2020
Web Feature

'Rooting' for Brachypodium Genes

Plant scientists at Pacific Northwest National Laboratory have garnered the most comprehensive—and first ever—genetic level dataset of the rooting process in a flowering model grass.
MARCH 12, 2020
Web Feature

Tracking Toxics in the Salish Sea

With the help of a diagnostic tool called the Salish Sea Model, researchers found that toxic contaminant hotspots in the Puget Sound are tied to localized lack of water circulation and cumulative effects from multiple sources.

Oxide interfaces in disarray

Microscope image, bright blue background with bright green oxides

Atomic-scale imaging informs interface models for oxygen defect formation during disordering of oxides used in energy and computing.

| PNNL

Exploration of disorder at material interfaces could lead to better device performance

March 3, 2020
March 3, 2020
Highlight

The structure of an interface at which two materials meet helps determine the performance of the computers and other devices we use every day. However, understanding and controlling interface disorder at the atomic level is a difficult materials science challenge.

A research team at PNNL and Texas A&M University combined cutting edge imaging and numerical simulations to examine disordering processes in widely used oxide materials. They found that certain oxide interface configurations remain stable in extreme environments, suggesting ways to build better performing, more reliable devices for fuel cells, space-based electronics, and nuclear energy.

Visualizing the disordering process

As reported in Advanced Materials Interfaces (Asymmetric Lattice Disorder Induced at Oxide Interfaces,” DOI: 10.1002/admi.201901944) the team set out to examine interfaces between pyrochlore-like and perovskite oxides, two common classes of functional materials used in energy and computing technologies. While most past work has focused on individual bulk materials, less attention has been paid to interfaces connecting them, as would be the case in a device. In particular, it is not clear how interface features, such as composition, bonding, and possible defects, govern disordering processes.

Funded by PNNL’s Nuclear Process Science Initiative (NPSI), the team employed experimental and theoretical methods to study the interface at different stages of disorder introduced through ion irradiation. They imaged the local structure of the material using high-resolution scanning transmission electron microscopy and convergent beam electron diffraction, which showed that the bulk of the two materials disordered (amorphized) before the interface. After further irradiating the material, they found that a band region near the interface had remained crystalline, while the rest of the structure had become amorphous.

To understand this behavior, the team turned to a technique called electron energy loss spectroscopy, which allowed them to examine the atomic-scale chemistry and defects formed at the interface. Their measurements revealed the presence of substantial amounts of defects called oxygen vacancies, which can greatly affect properties such as magnetism and conductivity. Based on these observations, the team constructed a theoretical model of the interface and explored the effect of different interface configurations on the tendency to form vacancies.

“In our model we are able to systematically vary interface features, such as crystal structure, intermixing, and strain, to see their effect on defect formation. We found that the structure of the materials on both sides of the interface can influence where defects are likely to form first,” explained Steven R. Spurgeon, a PNNL materials scientist. “Our model suggests that by selecting appropriate crystal structures and controlling how they connect, it may be possible to dictate the sequence of defect formation, which would allow us to enhance the properties of these materials.”

The team is exploring other interface structures and chemistries, with an eye toward improving the performance of oxides used in extreme environments.

The study was conducted as part of the NPSI project, “Damage Mechanisms and Defect Formation in Irradiated Model Systems,” led by Spurgeon.

Research Team

Steven Spurgeon (PNNL), Tiffany Kaspar (PNNL), Vaithiyalingam Shutthanandan (Environmental Molecular Sciences Laboratory at PNNL), Jonathan Gigax (Texas A&M), Lin Shao (Texas A&M), Michel Sassi (PNNL).
February 20, 2020

Probabilistic Projections of Sea-Level Rise and Global Mean Temperature using Hector

Sea level at port

Scientists are exploring ways to derive more accurate predictions that can help with preparations for changing sea levels.

Coupled Hector and BRICK models to analyze parametric uncertainties in extreme temperature and sea-level rise projections.

January 22, 2020
January 22, 2020
Highlight

The Science
Simple earth system models are useful tools for quantifying uncertainty, given their flexibility, computational efficiency, and suitability for the largeensemble frameworks necessary for statistical estimation. A team including researchers from Pacific Northwest National Laboratory coupled a new version of the simple model Hector with a 1D diffusive heat and energy balance model (Diffusion Ocean Energy balance CLIMate model) and a sea-level change module (Building blocks for Relevant Ice and Climate Knowledge) that also represents contributions from thermal expansion, glaciers and ice caps, and polar ice sheets. They applied a Bayesian calibration approach to quantify model uncertainties surrounding 39 model parameters, using observational and historical information from global surface temperature, thermal expansion, and other contributors to sea-level change, to analyze the effects of different sources of information on extreme sea-level rise projections.

The Impact
Different observational constraints can yield similar temperatures but drastically different sea-level rise projections, particularly for extreme sea-level rise scenarios. Results pave the way for new research linking global climate uncertainties (e.g., climate sensitivity) with local-scale flood risk analysis.

Summary
Using observational and historical information from global surface temperature, thermal expansion, and other contributors to sea-level change, the research team applied Bayesian calibration to quantify model uncertainties surrounding model parameters and analyzed the effects of different sources of information on extreme sea-level rise projections. They found that the addition of thermal expansion as an observational constraint sharpens inference for the upper tail of equilibrium climate sensitivity estimates (the 97.5 percentile is tightened from 7.1 to 6.6 K), while other contributors to sea-level change play lesser roles. The thermal expansion constraint also has implications for probabilistic projections of global surface temperature (the 97.5 percentile for RCP8.5, year-2100 temperature decreases 0.3 K). Ocean heat data provide a somewhat sharper equilibrium climate sensitivity estimate, while thermal expansion data allow for constrained sea-level projections. Different combinations of observational constraints can yield very similar year-2100 temperatures but drastically different SLR projections. This is particularly important for extreme sea-level projections.

PNNL Contact
Mohamad Hejazi, Pacific Northwest National Laboratory, Mohamad.Hejazi@pnnl.gov  

Funding
This research was supported by the U.S. Department of Energy Office of Science, Biological and Environmental Research through the MultiSector Dynamics, Earth and Environmental System Modeling Program, as well as the Penn State Center for Climate Risk Management

Vega-Westhoff B, RL Sriver, CA Hartin, TE Wong, and K Keller. 2019. “Impacts of observational constraints related to sea level on estimates of climate sensitivity.” Earth’s Future 7(6):667‒690. DOI: 10.1029/2018EF001082

May 7, 2019
May 7, 2019
JANUARY 10, 2020
Web Feature

Clark Recognized for Nuclear Chemistry Research

The world’s largest scientific society honored Sue B. Clark, a PNNL and WSU chemist, for contributions toward resolving our legacy of radioactive waste, advancing nuclear safeguards, and developing landmark nuclear research capabilities.