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Fundamental and Computational Sciences Directorate

Staff information

Kristin Jarman

Stat Modlng & Expr Design
Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: K7-20
Richland, WA 99352

PNNL Publications

2017

  • Bartholomew RA, RM Ozanich, JS Arce, HE Engelmann, A Heredia-Langner, BA Hofstad, JR Hutchison, KH Jarman, AM Melville, KD Victry, and CJ Bruckner-Lea. 2017. "Evaluation of Immunoassays and General Biological Indicator Tests for Field Screening of Bacillus anthracis and Ricin." Health Security 15(1):81-96.  doi:10.1089/hs.2016.0044
  • Ozanich RM, HA Colburn, KD Victry, RA Bartholomew, JS Arce, A Heredia-Langner, KH Jarman, HW Kreuzer, and CJ Bruckner-Lea. 2017. "Evaluation of PCR Systems for Field Screening of Bacillus anthracis." Health Security 15(1):70-80.  doi:10.1089/hs.2016.0043

2016

  • Straub TM, DR Call, CJ Bruckner-Lea, HA Colburn, CL Baird, RA Bartholomew, RM Ozanich, and KH Jarman. 2016. "Field application of pathogen detection technologies." Chapter 2.3.4 in Manual of Environmental Microbiology 4th edition, ed. Yates, MVNo publisher listed doi:10.1128/9781555818821.ch2.3.4

2014

  • Heredia-Langner A, BG Amidan, S Matzner, and KH Jarman. 2014. "Optimization of an individual re-identification modeling process using biometric features." In Proceedings of the International Conference on Data Mining (DMIN 2014), July 21-24, 2014, Las Vegas, Nevada, ed. R Stahlbock, GM Weiss, M Abou-Nasr and H Arabnia.  CSREA Press, ATHENS, GA. 

2013

  • Heredia-Langner A, KH Jarman, BG Amidan, and JG Pounds. 2013. "Genetic Algorithms and Classification Trees in Feature Discovery: Diabetes and the NHANES database." In Proceedings of the 2013 World Congress in Computer Science, Computer Engineering, and Applied Computing (WORLDCOMP'13), July 22-25, 2013, Las Vegas, Nevada.  CSREA Press, Athens, GA. 

2012

  • Johnson TJ, YF Su, KH Jarman, BM Kunkel, JC Birnbaum, AG Joly, EG Stephan, RG Tonkyn, RG Ewing, and GC Dunham. 2012. "Demonstrated Wavelength Portability of Raman Reference Data for Explosives and Chemical Detection." International Journal of Spectroscopy 2012:Article No. 297056.  doi:10.1155/2012/297056

2011

  • Harvey SD, KH Jarman, JJ Moran, CM Sorensen, and BW Wright. 2011. "Characterization of Diesel Fuel by Chemical Separation Combined with Capillary Gas Chromatography (GC) Isotope Ratio Mass Spectrometry (IRMS)." Talanta 99:262-269.  doi:10.1016/j.talanta.2012.05.049
  • Kunkel BM, YF Su, RG Tonkyn, EG Stephan, AG Joly, JC Birnbaum, KH Jarman, and TJ Johnson. 2011. "Raman Database Considerations for Near-Infrared Systems." In Optics and Photonics for Counterterrorism and Crime Fighting VIII, September 19, 2011, Prague, Czech Republic. Proceedings of the SPIE, vol. 8189, ed. R Zamboni, et al, p. Article No. 818905.  SPIE, Bellingham, WA.  doi:10.1117/12.898368

2010

  • Wahl KL, HA Colburn, DS Wunschel, CE Petersen, KH Jarman, and NB Valentine. 2010. "Residual Agar Determination in Bacterial Spores by Electrospray Ionization Mass Spectrometry ." Analytical Chemistry 82(4):1200-1206. 

2008

  • Jarman KH, HW Kreuzer-Martin, DS Wunschel, NB Valentine, JB Cliff, CE Petersen, HA Colburn, and KL Wahl. 2008. "Bayesian Integrated Microbial Forensics." Applied and Environmental Microbiology 74(11):3573-3582.  doi:10.1128/AEM.02526-07
  • Valentine NB, MG Butcher, YF Su, KH Jarman, MM Matzke, BJM Webb-Robertson, EA Panisko, BAB Seiders, and KL Wahl. 2008. "Evaluation of Sampling Tools for Environmental Sampling of Bacterial Endospores from Porous and Non-porous Surfaces." Journal of Applied Microbiology 105 (4):1107-1113. 

2007

  • Kreuzer-Martin HW, and KH Jarman. 2007. "Stable Isotope Ratios and the Forensic Analysis of Microorganisms." Applied and Environmental Microbiology 73(12):3896-3908.  doi:10.1128/AEM.02906-06

2005

  • Jarman KH, and KL Wahl. 2005. "Development of Spectral Pattern Matching Approaches to Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry for Bacterial Identification." In Identification of Microorganisms by Mass Spectrometry, ed. Cl Wilkins & JO Lay.  John Wiley & Sons, Inc., Hoboken, NJ. 
  • Webb-Robertson BJM, KH Jarman, SD Harvey, C Posse, and BW Wright. 2005. "An improved optimization algorithm and Bayes factor termination criterion for sequential projection pursuit." Chemometrics and Intelligent Laboratory Systems 77(1-2):149-160. 
  • Cannon WR, KH Jarman, BJM Webb-Robertson, DJ Baxter, CS Oehmen, KD Jarman, A Heredia-Langner, KJ Auberry, and GA Anderson. 2005. "A Comparison of Probability and Likelihood Models for Peptide Identification from Tandem Mass Spectrometry Data." Journal of Proteome Research 4(5):1687-1698. 
  • Cliff JB, KH Jarman, NB Valentine, S Golledge, DJ Gaspar, DS Wunschel, and KL Wahl. 2005. "Differentiation of Spores of Bacillus Subtilis Grown in Different Media by Elemental Characterization using Time-of-Flight Secondary Ion Mass Spectrometry." Applied and Environmental Microbiology 71(11):6524-6530. 
  • Webb-Robertson BJM, DF Lowry, KH Jarman, SJ Harbo, Q Meng, AF Fuciarelli, JG Pounds, and MT Lee. 2005. "A Study of Spectral Integration and Normalization in NMR-based Metabonomic Analyses ." Journal of Pharmaceutical and Biomedical Analysis 39(3-4):830-836. 
  • Wunschel DS, EA Hill, JS Mclean, KH Jarman, YA Gorby, NB Valentine, and KL Wahl. 2005. "Effects of Varied pH, Growth Rate and Temperature using Controlled fermentation and Batch culture on Matrix Assisted Laser Desorption/Ionization Whole Cell Protein Fingerprints. ." Journal of Microbiological Methods 62(3):259-271. 
  • Wunschel SC, KH Jarman, CE Petersen, NB Valentine, KL Wahl, D Schauki, J Jackman, CP Nelson, and E White. 2005. "Bacterial Analysis by MALDI-TOF Mass Spectrometry: An Inter-laboratory Comparison ." Journal of the American Society for Mass Spectrometry 16(4):456. 

2004

  • Heredia-Langner A, WR Cannon, KD Jarman, and KH Jarman. 2004. "De Novo Analysis of Tandem Mass Spectrometry Data as a Non-Deterministic Optimization Problem." In Proceedings of The International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS'04), ed. Faramarz Valafar & Homayoun Valafar, pp. 113-117.  CSREA Press, Las Vegas, NV. 
  • Heredia-Langner A, WR Cannon, KD Jarman, and KH Jarman. 2004. "Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data." Bioinformatics 20(14):2296-2304. 
  • Malard JM, A Heredia-Langner, DJ Baxter, KH Jarman, and WR Cannon. 2004. "Constrained De-Novo Peptide Identification via Multi-objective Optimization." In Proceedings of the 18th International Parallel and Distributed Processing Symposium, pp. 191-199.  Institute of Electrical and Electronics Engineers, Piscataway, NJ. 

2003

  • Jarman KD, WR Cannon, KH Jarman, and A Heredia-Langner. 2003. "A model of random sequences for de novo peptide sequencing." In Proceedings of the 3rd IEEE International Symposium on Bioinformatics and Bioengineering, pp. 206-213.  IEEE Computer Society, Los Alamitos, CA. 
  • Jarman KH, DS Daly, KK Anderson, and KL Wahl. 2003. "A new approach to automated peak detection." Chemometrics and Intelligent Laboratory Systems 69(1-2):61-76. 
  • Johnson KJ, BW Wright, KH Jarman, and RE Synovec. 2003. "High-speed peak matching algorithm for retention time alignment of gas chromatographic data for chemometric analysis ." Journal of Chromatography A 996(1-2):141-155. 

2002

  • Wahl KL, SC Wunschel, KH Jarman, NB Valentine, CE Petersen, MT Kingsley, KA Zartolas, and AJ Saenz. 2002. "Analysis of Microbial Mixtures by Matrix-assisted Laser Desorption/Ionization time-of-flight Mass Spectrometry." Analytical Chemistry 74(24):6191-6199. 
  • Wahl KL, SC Wunschel, CE Petersen, KD Jarman, NB Valentine, and KH Jarman. 2002. "Smart Data Collection and Interpretation for Bacterial Identification by MALDI-MS." In Proceedings of the 50th ASMS Conference on Mass Spectrometry and Allied Topics, pp. 31-32.  American Society for Mass Spectrometry, Santa Fe, NM. 

2000

  • Jarman KH, SC Wunschel, AJ Saenz, CE Petersen, NB Valentine, MT Kingsley, and KL Wahl. 2000. "An Algorithm for Automated Bacterial Identification using Matrix-assisted Laser Desorption/Ionization Mass Spectrometry." Analytical Chemistry 72(6):1217-1223. 

1999

  • Jarman KH, DS Daly, CE Petersen, AJ Saenz, NB Valentine, and KL Wahl. 1999. "Extracting and Visualizing Matrix-assisted Laser Desorption/Ionization Time-of-Flight Mass Spectral Fingerprints." Rapid Communications in Mass Spectrometry 13(15):1586-1594. 
  • Jarman KH, RC Hanlen, and PA Manzolillo. 1999. Handwriting Examination: Moving from Art to SciencePNNL-12180, Pacific Northwest National Laboratory, Richland, WA. 
  • Saenz AJ, CE Petersen, NB Valentine, SL Gantt, KH Jarman, MT Kingsley, and KL Wahl. 1999. "Reproducibility of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for replicate bacterial culture analysis." Rapid Communications in Mass Spectrometry 13(15):1580-1585. 
  • Wahl KL, KH Jarman, NB Valentine, MT Kingsley, CE Petersen, SC Wunschel, and AJ Saenz. 1999. Analysis of Hazardous Biological Materials by MALDI Mass SpectrometryPNNL-13099, Pacific Northwest National Laboratory, Richland, WA. 

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