Staff information
Melissa Matzke
Computational Biology & Bioinformatics
Scientist
Pacific Northwest National Laboratory
PO Box 999
MSIN: J4-33
Richland, WA 99352
509/371-7385
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PNNL Publications
2013
- Matzke MM, JN Brown, MA Gritsenko, TO Metz, JG Pounds, KD Rodland, AK Shukla, RD Smith, KM Waters, JE McDermott, and BJM Webb-Robertson. 2013. "A Comparative Analysis of Computational Approaches to Relative Protein Quantification Using Peptide Peak Intensities in Label-free LC-MS Proteomics Experiments." Proteomics 13(3-4):493-503. doi:10.1002/pmic.201200269
- Sims AC, SC Tilton, V Menachery, L Gralinski, A Schafer, MM Matzke, BJM Webb-Robertson, JH Chang, ML Luna, C Long, AK Shukla, A Bankhead, S Burkett, G Zornester, CK Tseng, TO Metz, R Pickles, SK Mcweeney, RD Smith, MG Katze, KM Waters, and R Baric. 2013. "Release of Severe Acute Respiratory Syndrome Coronavirus Nuclear Import Block Enhances Host Transcription in Human Lung Cells." Journal of Virology 87(7):3885-902. doi:10.1128/JVI.02520-12
- Webb-Robertson BJM, MM Matzke, TO Metz, JE McDermott, J Walker, KD Rodland, JG Pounds, and KM Waters. 2013. "Sequential Projection Pursuit Principal Component Analysis - Dealing with Missing Data Associated with New -Omics Technologies." BioTechniques 54(3):165-168.
2012
- Matzke MM, S Allan, KA Anderson, and KM Waters. 2012. "An Approach for Calculating a Confidence Interval from a Single Aquatic Sample for Monitoring Hydrophobic Organic Contaminants." Environmental Toxicology and Chemistry 31(12):2888-2892. doi:10.1002/etc.2014
- Forsberg ND, D Stone, A Harding, BL Harper, SG Harris, MM Matzke, A Cardenas, KM Waters, and K Anderson. 2012. "Effect of Native American Fish Smoking Methods on Dietary Exposure to Polycyclic Aromatic Hydrocarbons and Possible Risks to Human Health." Journal of Agricultural and Food Chemistry 60(27):6899-6906. doi:10.1021/jf300978m
- Shorey L, DJ Castro, WM Baird, LK Siddens, CV Lohr, MM Matzke, KM Waters, RA Corley, and DE Williams. 2012. "Transplacental Carcinogenesis with Dibenzo[def,p]chrysene (DBC): Timing of Maternal Exposures Determines Target Tissue Response in Offspring." Cancer Letters 317(1):49-55. doi: 10.1016/j.canlet.2011.11.010
2011
- Matzke MM, KM Waters, TO Metz, JM Jacobs, A Sims, R Baric, JG Pounds, and BJM Webb-Robertson. 2011. "Improved Quality Control Processing of Peptide-centric LC-MS Proteomics Data." Bioinformatics 27(20):2866-2872.
- Rasmussen A, DL Diamond, JE McDermott, X Gao, TO Metz, MM Matzke, V Carter, S Belisle, MJ Korth, KM Waters, RD Smith, and MG Katze. 2011. "Systems Virology Identifies a Mitochondrial Fatty Acid Oxidation Enyzme, Dodecenoyl Coenzyme A Delta Isomerase, Required for Hepatitis C Virus Replication and Likely Pathogenesis." Journal of Virology 85(22):11646-11654. doi:10.1128/JVI.05605-11
- Webb-Robertson BJM, MM Matzke, JM Jacobs, JG Pounds, and KM Waters. 2011. "A Statistical Selection Strategy for Normalization Procedures in LC-MS Proteomics Experiments through Dataset Dependent Ranking of Normalization Scaling Factors." Proteomics 11(24):4736-4741. doi: 10.1002/pmic.201100078
2010
- Webb-Robertson BJM, LA McCue, KM Waters, MM Matzke, JM Jacobs, TO Metz, SM Varnum, and JG Pounds. 2010. "Combined Statistical Analyses of Peptide Intensities and Peptide Occurrences Improves Identification of Significant Peptides from MS-based Proteomics Data." Journal of Proteome Research 9(11):5748-5756.
2009
- Warner CL, CJ Bruckner-Lea, JW Grate, TM Straub, GJ Posakony, NB Valentine, RM Ozanich, LJ Bond, MM Matzke, BP Dockendorff, CO Valdez, PLJ Valdez, and SL Owsley, Jr. 2009. "A Flow-Through Ultrasonic Lysis System for the Disruption of Bacterial Spores." JALA. Journal of the Association for Laboratory Automation 14(5):277-284.
- Webb-Robertson BJM, MM Matzke, and CS Oehmen. 2009. "Dimension Reduction via Unsupervised Learning Yields Significant Computational Improvements for Support Vector Machine Based Protein Family Classification." In The Seventh International Conference on Machine Learning and Applications , pp. 457-462. IEEE Computer Society, Los Alamitos, CA.
2008
- Valentine NB, MG Butcher, YF Su, KH Jarman, MM Matzke, BJM Webb-Robertson, EA Panisko, BAB Seiders, and KL Wahl. 2008. "Evaluation of Sampling Tools for Environmental Sampling of Bacterial Endospores from Porous and Non-porous Surfaces." Journal of Applied Microbiology 105 (4):1107-1113.
2005
- Posse C, BD Matzke, CM Anderson, AJ Brothers, MM Matzke, and TA Ferryman. 2005. "Extracting Information from Narratives: An Application to Aviation Safety Reports." In 2005 IEEE Aerospace Conference, pp. 1-14. IEEE Conference Publications, Manhattan Beach, CA.
- Webb-Robertson BJM, CS Oehmen, and MM Matzke. 2005. "SVM-BALSA: Remote Homology Detection based on Bayesian Sequence Alignment." Computational Biology and Chemistry 29(6):440-3.